Glyma04g43330 - SoyBase

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Report for Sequence Feature Glyma04g43330

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48930502
stop:	48935155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19770	AT	Annotation by Michelle Graham. TAIR10: Vacuolar sorting protein 9 (VPS9) domain \| chr3:6866916-6869114 FORWARD LENGTH=520	SoyBase	E_val: 0	ISS
GO:0000919	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell plate assembly	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0048528	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2319	KOG	Vacuolar assembly/sorting protein VPS9	JGI		ISS
PTHR23101	Panther	RAB GDP/GTP EXCHANGE FACTOR	JGI		ISS
PF02204	PFAM	Vacuolar sorting protein 9 (VPS9) domain	JGI		ISS
UniRef100_G7J457	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rab5 GDP/GTP exchange factor n=1 Tax=Medicago truncatula RepID=G7J457_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A66B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A66B related cluster n=1 Tax=unknown RepID=UPI000233A66B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43330

Paralog	Evidence	Comments
Glyma06g11340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g254000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g43330

Limit To All Plant Sequences

>Glyma04g43330.1   sequence type=CDS   gene model=Glyma04g43330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCTGATCCCGATAGGGACAGTGCCACGGTTCAAGCTTTCCTCGCGAAAATGGAAGCGGATTTCAGTGCTCATCCACTTTGGGCTGGTTGCTCCGAAGAGGAACTCGCAAGTGCCGGTGAAGGACTTGAGAAGTATGTTATGACAAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAATTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAATTTATTCGACCTGAAAATTTGGATATCAAGCCAGCATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTGCAGAAGATCAACATGTACAAGGCACCCAGGGATAAACTTGTCTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGGTTGCTTCCAGAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTCTCTGCTGAGTCATTCATCTCTAACATCGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGGGAAACATGGAATTTGCTCGTGCTATGCTTTCAGGTATTTCGGCTGATACACAAGATCCTGGTTCACCTTATCAAAATAATGGACATCATACAAGAGCAGAACCCACTAAGCACAAAGCTTTGATTGATCATAACGACCCTGCACTACGAACTCCATCATCTGTTGTGAAATCAGAAAGCAAGAAAGTGACTTTTGCAGATGAATCATTGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATTTTAAAGGAGGACAAGTTGAATGCAGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACCTAACAGTAGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCCAAAGGGTTAGGAATCTCTCCTACATCTCTTCCACCATCCAATTCCCAAGATAATTCTGAAGGCCATGCTGAAGTAGATTCTTCAGACGGTGGACCTCTAGATGACAATAATAAATCAGAAGAATCTATTGATACAACAGAGGATAGTTCAGATAAAGTTTCACTTGAGGAGAGGAAAATTGAATCTGGTCTGCCCAAGGATGAGCCAGTTGCTCCTGAGGGTGATGCCCCCCCTTAA

Predicted protein sequences of Glyma04g43330

Limit To All Plant Sequences

>Glyma04g43330.1   sequence type=predicted peptide   gene model=Glyma04g43330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSATVQAFLAKMEADFSAHPLWAGCSEEELASAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIRPENLDIKPAFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFEGNMEFARAMLSGISADTQDPGSPYQNNGHHTRAEPTKHKALIDHNDPALRTPSSVVKSESKKVTFADESLITKVPSLSDLENKGASMILKEDKLNAVFGEFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLPPSNSQDNSEGHAEVDSSDGGPLDDNNKSEESIDTTEDSSDKVSLEERKIESGLPKDEPVAPEGDAPP*

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