Glyma04g43310 - SoyBase

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Report for Sequence Feature Glyma04g43310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48906826
stop:	48918420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77800	AT	Annotation by Michelle Graham. TAIR10: PHD finger family protein \| chr1:29253800-29260190 FORWARD LENGTH=1375	SoyBase	E_val: 4.00E-167	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0954	KOG	PHD finger protein	JGI		ISS
PTHR13793	Panther	PHD FINGER PROTEINS	JGI		ISS
PTHR13793:SF6	Panther	AF10/AF17 SUBFAMILY	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7J3P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein Jade-1 n=1 Tax=Medicago truncatula RepID=G7J3P3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JZA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZA9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43310

Paralog	Evidence	Comments
Glyma06g11370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g253800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g43310

Limit To All Plant Sequences

>Glyma04g43310.1   sequence type=CDS   gene model=Glyma04g43310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCTGCTTCCTGTGTACGTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCCGTGGGAGGGCATGGTGGAGGTTGGTGATGCTGCCGCCGTGGAGAGGCGGTGCGAGGCTAATTTTCCGGCTGAAATTCCTCGCAACTCTGCCGCCGTGCGTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTTGCGGAGCGTTCGCCTTTCGATGTTGCTGAAGAGACGTCGACTTCTGCCGCTGCGGTTACTCTCCCCGGTGGCTTGGCTAGTTTGCTGAACCGGCAGGGTGATAACCGGAGGCGTCTCAAGAAGTCTCATTCTGGCGCGAATAAGAGGAAATCGTCGAATAGGGCAAACCAGAAGAAGCCAGAGGATTCTAACATTTGGACTGAGACGGAGGAGTACTTTAGGGACTTGACCTTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCACTTCTAGTTTAGTGTCTCAGGACTGTTTCACCATCCCGTGTTTGGGAAATGCTCCTAGGCACAATGCAGTTACTAGTAATAGTGGGAATGAAATGGAGCCTGTTCCAAAATTCAATGTAGTAGTTAGTAGTGAGGATGGAGAAAAGGGTGAGGATGAAAACAAGGATGGTGAAGCGGTGGAAAGTGAGGATGAATTGTTGGTAATTGAGGCAATTGACGATGTTGCTGTTGAACAAGCTCCTCCCCAGGACGACAAGAGTCAGGACATTTCTGATTCTTCTGTTAGTCTAGAGTGGTTTTTAGGTTGTAGGAATAGGGTTTCTTTGACTTCTGAGCGCCCTACCAAGAAAAGAAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTGTAATGACTTGTCCTTTTGATGAGGGCCAGCTGTTTTGCCATTATTGTGGCAGGGGAGACACTGGCAGGGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGCAGTTCACCGAAAGTGCTATGGTGTGCATGATGATATAGATGAGGCTTGGCTGTGCTCCTGGTGCAAGCAAAAGGTTGATGTTGATGTGTCGGTGAATCCTTGTGTTCTTTGCCCAATGAAGGGTGGTGCATTAAAACCAGTTAATAGCAGCGCGGAAGGTGTGGGGTCAGTCCCATTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGGAAGAAATTAGTGTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGGTGTAGTCATGGAAGCTGCAGAGCTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCTAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACCAGAAAACAGAAGCATCTTTCCATTGGAAGGCTCTATCGCAGTTAGGAATGATATCTCAGAAGCCAAAGGCTTTCCAGTGACATTGCCATTGAGTGGTGAACAGAACTTGAAAGATTGCAGGAATCGAGAATTAGCCTCTGATAGTAGTCCTGACAAACTGAACCATAATGATGAACCACCAGATGGAGGATTATCTGGTTGCAGGATAAGTGCTCATGATGACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGGAGTGGTAGGGAGAGCCAATGAGAATATTGATGCATCTGACTCTCTCAGTTTTGCGCTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAATTCAAACCAGCCAATGCATCCAAAAATGATAGTGGAGCCACAGATGGTTCTGATACTTTACCAATGTCAGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCGCCCAGGAGAAGAACCACCAATAACATTAGAATTTTGAAGGATAATAATGTGTTATGTTCATCTGAAGGGGTTACTGGTGAGAATGGGATGCCGGTGGACATGTGCCGAGTAGGTCAGTCTGACTGTGACAATCCAACAAATTATAATGAAGCATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGCTTCTGGATGTGTCTCAGAAGACAAGTCTACTGCTTGTTTGCAAAATGCTTCTGTGCTTTCTGATCACTGTGTTGTCCATTCTGCTTCAGAACCACCTGATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTCGTGATGGGGTGCCCTTGGAGGACATTATATGTTCAAGTGATGAGGGAAATTCTTCTTTGGTTGAATCCTTTGGGGGTAGTGCCTGCTCAAGTACCCAAAATCAGAACTTAACTCAAGTTGATTTTTCAAAGCCTGATGAAGTAAATATGGAGCAGTTGGTTAGGGCTATAAAAATGGGACTTTTTGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTATAGTGTTGCCAAGAGTTTGCCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGAAGTTATTGTTAATCAATATCTGCGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTACTAGGGCTCTCCGGAAAGACAACTTAGATGAATCAATGCAACAAGAGAATTTGTTAAAATTGGATACTCTAAATGGAAGAACCGGTGCTTGTTCTCAGCCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCGTCCGAGAAATATTCAGAATTTTGCATGCCAACCTCAGATTTGTCTAAGGAGCAATGTAAATCATGTGATATTTGCAGACGATCAGAGTTTATTTTAAACCCTATCCTAGTGTGCTCTGGTTGCAAGGTTTCGGTGCACTTGGATTGTTATCGTAGTGTGAAAGAAACAACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCCTCTAGAAGCTCTGGGGCAGCTGCTATCAATTTCTGGGAGAAGTCTGTTGTAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGAAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAACTTTGCAAAAAGGAGTTGACATTTGTTGCATCTGCCACCACAAGCATGGTGTATGCATGAAGTGTTGCTACGGTCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGAGCTGGTTTGTACATGAATGTGAGGCCTACTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAGATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGAGGGAATTGGTAATATCTTCACATGACATACTGGCCTTTAAAAGAGATCATGTTGCTAGGTCGGTGCTGGCTCGTAGCCATTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGTTACAGATCATGCAGTGAACCACTCCAAAGATCGGATGATGTTACTGTGGACAGTTCAGTTTCTGCCAAGCGCCGTGTCAGAGTCGCCATATCTATGGACACAGACCCAAAATTGGACGATGACTGCTCAACCTCTCAAGTCGATACAACCACAAGATTCTTGATAGATCACAATTTTCTGGCAAGAAAGTTCCTCAGAGAGCCGCTGCATCACGCAATATTTCCGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATTCGGAGACATTCGGAAAAGAGCTTGTTATGA

Predicted protein sequences of Glyma04g43310

Limit To All Plant Sequences

>Glyma04g43310.1   sequence type=predicted peptide   gene model=Glyma04g43310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCFLCTLLLPAMTGDRCHPWEGMVEVGDAAAVERRCEANFPAEIPRNSAAVREIDYLSQARKALAERSPFDVAEETSTSAAAVTLPGGLASLLNRQGDNRRRLKKSHSGANKRKSSNRANQKKPEDSNIWTETEEYFRDLTLADIDTLFEASRTSSLVSQDCFTIPCLGNAPRHNAVTSNSGNEMEPVPKFNVVVSSEDGEKGEDENKDGEAVESEDELLVIEAIDDVAVEQAPPQDDKSQDISDSSVSLEWFLGCRNRVSLTSERPTKKRRLLGVEAGLEKVVMTCPFDEGQLFCHYCGRGDTGRDSNRLIVCASCKVAVHRKCYGVHDDIDEAWLCSWCKQKVDVDVSVNPCVLCPMKGGALKPVNSSAEGVGSVPFVHLFCSLWMPEVYIDDLKKMEPVMNVGEIKETRKKLVCSVCKAKCGACVRCSHGSCRASFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPENRSIFPLEGSIAVRNDISEAKGFPVTLPLSGEQNLKDCRNRELASDSSPDKLNHNDEPPDGGLSGCRISAHDDMLGCGAVPQQNVGVVGRANENIDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVQHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSGATDGSDTLPMSDSGLLDPVAVKSVPPRRRTTNNIRILKDNNVLCSSEGVTGENGMPVDMCRVGQSDCDNPTNYNEASIPNATEMNLTKSEDIFHEVQGNASGCVSEDKSTACLQNASVLSDHCVVHSASEPPDFGFIKKDAISSYIHPYINKKLLQIRDGVPLEDIICSSDEGNSSLVESFGGSACSSTQNQNLTQVDFSKPDEVNMEQLVRAIKMGLFEFSPQDELEGELVYFQHRLLQNAVAKKRHIDNLIYSVAKSLPHEIDKAHQQRWDEVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDNLDESMQQENLLKLDTLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSEFCMPTSDLSKEQCKSCDICRRSEFILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGAAAINFWEKSVVECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFKRGQIDAVEGMETLQKGVDICCICHHKHGVCMKCCYGHCQTTFHPSCARRAGLYMNVRPTGGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVISSHDILAFKRDHVARSVLARSHFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKRRVRVAISMDTDPKLDDDCSTSQVDTTTRFLIDHNFLARKFLREPLHHAIFPMKVDGDPNLESIRRHSEKSLL*

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