SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17900 | AT | Annotation by Michelle Graham. TAIR10: SET domain group 37 | chr2:7773420-7776675 REVERSE LENGTH=480 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2084 | KOG | Predicted histone tail methylase containing SET domain | JGI | ISS | |
| PTHR12197 | Panther | SET AND MYND DOMAIN CONTAINING | JGI | ISS | |
| PTHR12197:SF13 | Panther | SET AND MYND DOMAIN CONTAINING | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| PF01753 | PFAM | MYND finger | JGI | ISS | |
| UniRef100_G7J3L4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase ASHR1 n=1 Tax=Medicago truncatula RepID=G7J3L4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JZ98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ98_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g43200 not represented in the dataset |
Glyma04g43200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g11490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g252800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g43200.2 sequence type=transcript gene model=Glyma04g43200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAAACAAAACCTATTTTTGTTTTGTTTTTTGCATAGGACTCAAGTGAGCGTTGCAATGGAGGATTTGCAAAGTGGTCTGCAGAATCGCAAATTATCACTCTCAACCCTCCCAGAAAAGGGTCGTTCTCTCTTGGCCACTAGGGATTTCTATCCAGGTTTCAGTTGAAGATACTTTTCGTCTTTCCCAATTTGCCCTCGCAGAAGATGAATGCGTGTTTGGTTTGGTGTTGCAGGGGAAGTGATTATAAGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCTCGGTCTCCCCCCAGAAAAGGTGCGATGGATGTTTCACTACAATTAATAACAACGTCCTTAGCAGGTGCTCGCGTTGCCAACTTGCATTCTATTGTGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCCAGCCTCCACAAATACAAGAGAAAATCTCTCACACCATCCATACGCCTGATGCTCAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCAATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTAGAATGGCCAGGAATCAATATAAAAGAGATTGCTGAAAATTTTTCTAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGCTCAGCTTTGGTACGTGCGGTGCAGCATATACCCTCAGGTACTGAGGTGCTGATAAGTTACATAGAGACTGCTGAAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAAAAATGTGGTGGTTTCTTGCTTCGTACAACTGATGGGAAAGGATTCCAATGCCAAGGTTGTGGACTAATTAGGGACAAGGAGGAGATAAAGAGAATTACAACTGAAATTAAATTGCTATCTGAAGATGCTTCTAAGCCCTCTGCCACTTGCAATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTTTCATCCTTTATCAATCAACTTGATGCATACTAGGGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTACTGAAGCTTCTTACAAATTTTCCTCTAAAGAGTAGTAGAATGGCACAAATACACCTTTTAATAAGGACCTCTTGATGATGAAGTTGGAAGAAGCCCGTGCCTAAGCATCTTACAAATTGTGCTCTATAGAGTAGTAGAATACAAGTTGATGATTACAGTTGCTCTGCTGTTTGTAGAAGCTAGTCATTAAAACTGAATCACACAAAAAGGATTAATAGGTGTTTTCATTAGTGCTTGCCTAGTTGCTCAGTGAGTCGCATGAATCTCAATCGGATGAATTGCTAACGGCCAAAGAGATGGATGGGAATTATGGGACAATTTACTTTCTATTGGTAGGAAGGGTGCCTCTTTTTTTCCGCTTTTTTATATCTTTTTGCCAACGTGAATGTTTTAAACCTGAAAAGATACATGAACCATATTTTTTTAGAAAAATCTACACGCATGATTTGTTTAT
>Glyma04g43200.1 sequence type=CDS gene model=Glyma04g43200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATTTGCAAAGTGGTCTGCAGAATCGCAAATTATCACTCTCAACCCTCCCAGAAAAGGGTCGTTCTCTCTTGGCCACTAGGGATTTCTATCCAGGGGAAGTGATTATAAGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCTCGGTCTCCCCCCAGAAAAGGTGCGATGGATGTTTCACTACAATTAATAACAACGTCCTTAGCAGGTGCTCGCGTTGCCAACTTGCATTCTATTGTGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCCAGCCTCCACAAATACAAGAGAAAATCTCTCACACCATCCATACGCCTGATGCTCAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCAATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTAGAATGGCCAGGAATCAATATAAAAGAGATTGCTGAAAATTTTTCTAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGCTCAGCTTTGGTACGTGCGGTGCAGCATATACCCTCAGGTACTGAGGTGCTGATAAGTTACATAGAGACTGCTGAAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAAAAATGTGGTGGTTTCTTGCTTCGTACAACTGATGGGAAAGGATTCCAATGCCAAGGTTGTGGACTAATTAGGGACAAGGAGGAGATAAAGAGAATTACAACTGAAATTAAATTGCTATCTGAAGATGCTTCTAAGCCCTCTGCCACTTGCAATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTTTCATCCTTTATCAATCAACTTGATGCATACTAGGGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTACTGAAGCTTCTTACAAATTTTCCTCTAAAGAGTAG >Glyma04g43200.2 sequence type=CDS gene model=Glyma04g43200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGTTTGGTTTGGTGTTGCAGGGGAAGTGATTATAAGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCTCGGTCTCCCCCCAGAAAAGGTGCGATGGATGTTTCACTACAATTAATAACAACGTCCTTAGCAGGTGCTCGCGTTGCCAACTTGCATTCTATTGTGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCCAGCCTCCACAAATACAAGAGAAAATCTCTCACACCATCCATACGCCTGATGCTCAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCAATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTAGAATGGCCAGGAATCAATATAAAAGAGATTGCTGAAAATTTTTCTAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGCTCAGCTTTGGTACGTGCGGTGCAGCATATACCCTCAGGTACTGAGGTGCTGATAAGTTACATAGAGACTGCTGAAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAAAAATGTGGTGGTTTCTTGCTTCGTACAACTGATGGGAAAGGATTCCAATGCCAAGGTTGTGGACTAATTAGGGACAAGGAGGAGATAAAGAGAATTACAACTGAAATTAAATTGCTATCTGAAGATGCTTCTAAGCCCTCTGCCACTTGCAATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTTTCATCCTTTATCAATCAACTTGATGCATACTAGGGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTACTGAAGCTTCTTACAAATTTTCCTCTAAAGAGTAG
>Glyma04g43200.1 sequence type=predicted peptide gene model=Glyma04g43200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDLQSGLQNRKLSLSTLPEKGRSLLATRDFYPGEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKLHRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKRITTEIKLLSEDASKPSATCNYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEASYKFSSKE* >Glyma04g43200.2 sequence type=predicted peptide gene model=Glyma04g43200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVWFGVAGEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKLHRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKRITTEIKLLSEDASKPSATCNYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEASYKFSSKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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