SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77720 | AT | Annotation by Michelle Graham. TAIR10: putative protein kinase 1 | chr1:29210730-29213877 FORWARD LENGTH=777 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0596 | KOG | Dual specificity; serine/threonine and tyrosine kinase | JGI | ISS | |
| PTHR22974 | Panther | MIXED LINEAGE PROTEIN KINASE | JGI | ISS | |
| PTHR22974:SF6 | Panther | PROTEIN KINASE FAMILY PROTEIN | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7J3L3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7J3L3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A665 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A665 related cluster n=1 Tax=unknown RepID=UPI000233A665 | SoyBase | E_val: 0 | ISS |
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Glyma04g43190 not represented in the dataset |
Glyma04g43190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g11500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g252700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g43190.1 sequence type=CDS gene model=Glyma04g43190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCACGGACCTCCTCCGCGACGTTCAAGCCGCCTTGAAACGACACCGTCCTCTCGGTACAATGCAGTCCAATTGCATAAGGCCAAAGCGCCCGCTACTTCCTCAAAGAGCATCAAACATTTCTTCTTCTTCCGATGCCACCAATTCTCAAGAGGAAGCTTCTTCCAAGGATTCGCTTATAACCGTCGTCCCTGCTCAAAACCTAGACGCTCAGAAGAAAGTCCAGTTTTCAGTTCGAAGCAACGCTGCCTTGCAGGATGGAAAGGCCACTGAGTTGGAGAATTTATCTTCTCACATGAGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAGTCAAATTGAATCATCCTCATCGTCGTCGCTTGGATGCATCCAGCTGGAGAATGTTCCGCAGGCAGCGTTTGACGCGAGTTTGAAATGTGAAAGTGGAGTGAGTTCCGTGCTACCGAAGAGAAGTTTGGTTACCCAGGATCATTTGCAGCAATTCAGAAGTTTTTTGAGTCAGCCCGCGACACAATCTTCGGTGGTGGGACCTTCTTGTGCTACAACTACCTCGGTTCATTCAACTTCTGCACCAATGCTAAATTCAGCAACACGATATTCTCATTTGCGTCAAGATGGTGGCTCAAGTGTGGCTGCTGAGCCTTTGGGGGAGGTTAATGCTAATCCTTCTGAAGTCCGAGCTTCCGGTTCTTGTATTGATGATGCAGGGTTGTTATCTAAGGGGAGCAATCGATCTAAGGAGCAACAAGGGGGTGTGTTGAAGGAATCTGGCAATTCTAAATATACTTCTTGTGATGATGCGAAAGGGAAAGAGGCTGTGGATGTTGCCACTGTACAAACACAGGCTCCACTTCCCACAACCATAACCTCATCTTCAGATATGAAGTTGGGGTCTTCTAAGGAGGAAAAACGTGAGAAGACTGCAAGTAGTAAAGGTGCATCGGGTACCCGGAAAAGAACTTATGACCCTGATTTGTTTTTCAAAGTCAACGGCAAGCTTTATCAGCGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATCTCATCGGACTGTAGGATATATGCACTTAAAAAGATCAAGCTCAAGGGACGTGATTATGCTACTGCATATGGGTTTTGTCAAGAAATTGAGTATCTAAATAGGCTGAAGGGAAAGGATAACATCATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTACTTGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAGGATGGCAGGGTCAAGGATGATGGATGTATATACATGGTGCTTGAATATGGGGAAATCGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGAAACAACAAAACTATAGACGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGAATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGACACAACCAACATCCAACGGGATTCACAGGTGGGCACTCTAAGTTACATGTCTCCAGAAGCATTTTTGTGTAACGAGACTGATGCGAATGGAAACATCATAAAGTGTGGCCGACCATCAGATATCTGGTCCCTGGGCTGCATCCTTTATCAAATGGTATATGGGAGGACACCTTTTTCTGATTACAAGACATTTTGGGCGAAATTCAAAGTTATAACAGATCCAAATCATAAAATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATCTAATCCATCTTTGCCCCAAGATCATACCTGTAAATTGCTACAACTTATTTCTGAAACTTGTACATATGACCCTGAAGCAACCCAACTGTGTAGTCAGCTCCAACGGCTTCTTAGTGACCCACTTGAGAAAACAACTTGCTCACTATATTCACGAGATCAACAGCTAAAACTGCTGTCCCAAATGTCAGAACTCTGTATTCAGCTGCACGAACGTTTGACAAATACTGAAAACAAGTAG
>Glyma04g43190.1 sequence type=predicted peptide gene model=Glyma04g43190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGKPNPDSSSTDLLRDVQAALKRHRPLGTMQSNCIRPKRPLLPQRASNISSSSDATNSQEEASSKDSLITVVPAQNLDAQKKVQFSVRSNAALQDGKATELENLSSHMSSLGFAEMEWVEGSQIESSSSSSLGCIQLENVPQAAFDASLKCESGVSSVLPKRSLVTQDHLQQFRSFLSQPATQSSVVGPSCATTTSVHSTSAPMLNSATRYSHLRQDGGSSVAAEPLGEVNANPSEVRASGSCIDDAGLLSKGSNRSKEQQGGVLKESGNSKYTSCDDAKGKEAVDVATVQTQAPLPTTITSSSDMKLGSSKEEKREKTASSKGASGTRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGNNKTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFLCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHKITYEPVSNPWLLDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPSNPSLPQDHTCKLLQLISETCTYDPEATQLCSQLQRLLSDPLEKTTCSLYSRDQQLKLLSQMSELCIQLHERLTNTENK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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