Glyma04g43150 - SoyBase

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Report for Sequence Feature Glyma04g43150

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48760905
stop:	48763995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77690	AT	Annotation by Michelle Graham. TAIR10: like AUX1 3 \| chr1:29201232-29203317 REVERSE LENGTH=470	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0048829	GO-bp	Annotation by Michelle Graham. GO Biological Process: root cap development	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0010328	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin influx transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF3	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_Q9FEL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin transporter-like protein 3 n=2 Tax=Medicago truncatula RepID=LAX3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A3A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A3A7 related cluster n=1 Tax=unknown RepID=UPI000233A3A7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g43150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43150

Paralog	Evidence	Comments
Glyma06g11540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g252300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g43150

Limit To All Plant Sequences

>Glyma04g43150.2   sequence type=transcript   gene model=Glyma04g43150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCACCAAGGCCATTCACATTCAGTACTTTGCTGTCAAAAAAGTTTATATAAGGAAATTAGGGAAGCTACACAAGAATGTATGTGAAAGGGTGAATTAAAAGCAAGCACTTCTTCTCTCCTATCTATATCTTTTCTCACTTAGTCTTGTGTTGTCTTCCCCCACAACACACTTGAAGGGAGAGATAACAATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGGTAATTAGATCATGCACCTAGCTACAACTGATTATTTTTTAAATTCATATACACATATGCTGCACCATCCAATGCTTCACTTGGTGCTTATTATTTAATTACCAGCACATGCATACATTCAATTGCCGCCACTTCATTTTTCTTTTATTTCTCTTTTTTTTTTATCATATCATATAACTTATTACGACTATTTTTCTTTCTCTCTCTTTGTATAGATTAGCATAATGTCTCCATGAACAATTTTTCTTTTCTTTTTTGTTCATTTTTATTTTGTTTCTTAACAGAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATCAATTTCATACACCAAATTGACACATTTGGGCTATTTGCAAAGTGCTATCAATGTCCCCCTCACAAGGCTTAAGTATAAGTAGCTTCCTTTAGTTTCTTGTGATACTTTGAGATCATACATGCGTGTAAAGAGATTGGCTTTTAATATGTACCTTTTTATTTTTCTTCCATTTATCCCGCTTTATTTTATTTTTTCACTGTAAGAAGCCAAGTCTTTTGATTGGGTCAGCTAAAGGTGCGATGGCACATCACGGCCAGCCCCTATACGAACTTACAGTTAGAATTTCCTGTGCTGATTAATCATTTCTTGTTGTGCAACTACCTTGCCATATGCTAAACTAGTTGGTTTATGTTCTCCCTCCTCCTTTCTCTTTCTCTTTCCTCCCCCTACGTAGC

Coding sequences of Glyma04g43150

Limit To All Plant Sequences

>Glyma04g43150.1   sequence type=CDS   gene model=Glyma04g43150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATCAATTTCATACACCAAATTGACACATTTGGGCTATTTGCAAAGTGCTATCAATGTCCCCCTCACAAGGCTTAA

>Glyma04g43150.2   sequence type=CDS   gene model=Glyma04g43150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAAAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGGCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACCCTAACTTTGCCATCGGCATCTGCAGTTTATTGGGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGAGCTTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGGTAATTAGATCATGCACCTAG

Predicted protein sequences of Glyma04g43150

Limit To All Plant Sequences

>Glyma04g43150.1   sequence type=predicted peptide   gene model=Glyma04g43150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEKVETVVAGNYLEMEREEEGSKSTSGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLVMTTYTAWYMTIASLTHGQAEGVTHTGPAKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDQLLTHSNALSLLPRSGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMVTFASAPARENAVERPPSKLGGWVGLYSMNVFVVVWVLVVGFGLGGWASMINFIHQIDTFGLFAKCYQCPPHKA*

>Glyma04g43150.2   sequence type=predicted peptide   gene model=Glyma04g43150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEKVETVVAGNYLEMEREEEGSKSTSGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLVMTTYTAWYMTIASLTHGQAEGVTHTGPAKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDQLLTHSNALSLLPRSGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMVTFASAPAREVIRSCT*

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