Glyma04g43040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g43040

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48679429
stop:	48681215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g43040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21910	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr1:7696655-7697347 FORWARD LENGTH=230	SoyBase	E_val: 2.00E-45	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0034605	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to heat	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0071497	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_C9WA64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor 6 n=1 Tax=Glycine max RepID=C9WA64_SOYBN	SoyBase	E_val: 2.00E-167	ISS
UniRef100_C9WA64	UniRef	Annotation by Michelle Graham. Best UniRef hit: AP2 domain-containing transcription factor 6 n=1 Tax=Glycine max RepID=C9WA64_SOYBN	SoyBase	E_val: 2.00E-167	ISS

Expression Patterns of Glyma04g43040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g43040

Paralog	Evidence	Comments
Glyma06g11700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g43040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g251400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g43040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g43040

Limit To All Plant Sequences

>Glyma04g43040.2   sequence type=CDS   gene model=Glyma04g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTCTCTATAAATAGTGGATCTCTCTTCTTCCCCACATTCACTTTTGATTTGATTCTTTTCCCCACTTTCAGAACAGCAGCAACAAGGTATAGAGAGAGAGAGAGAGAGAGAGCCAAAAAAAAACAAACTAGTACTCAACAAAAAGAGAAAGAGAAACCTCTTAAACACGCACCCTTAATTCCTACCTCAAAGAAAGTACTACTCTTCAAACATTTTCTATTCACTGAAGAAGGATCTTTGCACTTGCACTTGCAGCCATCTATCATGGTTAAGTTAGAGCACAAGATCAAAACAGAACCATCATCAAAGGAAATGCGGTTATCTTCACTCTCATCATCAGCATCAACATCATCAGATTGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTGTCTGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCGGAGGCTGCAGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGATCCTCAGCAAATCTCAATTTCCCTTTAAGCTCTTCACAACAATACATTCCAGGAGAGGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCGGCCGCTGCAAATAGTTTCATTGACAATGCCAACACTCCCCCTTCCCCACCTCCTGCTTCTAACCCATCATCATTGGCCTCATCCCCCTCATTGGTCTCTTCTCCCTCGGATCAAATCGACGACAACGCATCGCTGATATCGTCTTTCGAAGCCTACACTAGTTGTGACCAAGCAAATCAACCAATGACTATGAATGTGATGGAACCTTGGTACACCTTTGCTGATGGTCTTCAATCCCCTAAGTATGTTGATCAGATGCTAAGTGGTGCTTTCTTCGATTTCGATTCGTCTCATCTGTTTGATGATCTATACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA

Predicted protein sequences of Glyma04g43040

Limit To All Plant Sequences

>Glyma04g43040.2   sequence type=predicted peptide   gene model=Glyma04g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSINSGSLFFPTFTFDLILFPTFRTAATRYRERERERAKKKQTSTQQKEKEKPLKHAPLIPTSKKVLLFKHFLFTEEGSLHLHLQPSIMVKLEHKIKTEPSSKEMRLSSLSSSASTSSDCKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQQYIPGEAVMSPKSIQRVAAAAANSFIDNANTPPSPPPASNPSSLASSPSLVSSPSDQIDDNASLISSFEAYTSCDQANQPMTMNVMEPWYTFADGLQSPKYVDQMLSGAFFDFDSSHLFDDLYEESDIRLWSFC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain