Report for Sequence Feature Glyma04g42990
Feature Type: gene_model
Chromosome: Gm04
Start: 48605786
stop: 48609866
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g42990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G08290 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr4:5239088-5240861 FORWARD LENGTH=384
SoyBase E_val: 9.00E-123 ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_G7J315 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7J315_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JZ78 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ78_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g42990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g42990
Paralog Evidence Comments
Glyma06g11760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g42990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g250900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g42990
Coding sequences of Glyma04g42990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g42990.1 sequence type=CDS gene model=Glyma04g42990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTACGTGGTTCACAAATGCAAGGCCGTATCTGCTGTTAGTGGCAGTTCAATTTGGGTCTGCTGGCATGTTCATATTTGCGATGGATGCTATAAAGAAGGGTATGAGCCATTACGTGTTCATCGTCTATCGTAATGCCATCGCCTCTGTATCTCTTGCTCCCTTCGCATTTGTTCTTGAAAGGAAAGTTAGGCCCAAGATGACTTTCCGGGTATTTTCAGAGATTATGGCACTGGCTTTCTTCGAAATAATACTGGACCAGTGCTTCGCCCTCTTGGGCATGAAATTCACGTCGGCATCTTTCCTATCTGCTGTTATGAACTCCGCTCCCTCTGTTACTTTTGTGATGGCTGTCATTCTAAGAATGGAGCACATGAAGATTAAGGAGGTGGCATGTCAAGCCAAAGTGATTGGCACAGTAATAACATTTGGAGGCACCTTGCTTATGGCACTGTACAAAGGACCCGTTCTTAGTTTTATGCGATCTTCAACTAGCCATCCTAGCCAACCTGAGAATGTGGCCACAGAAACTGGTAACCATTGGGTCATAGGGACATTGTTCCTCCTCATTGGTTGTGCTGGCTTTTCTGCATTTTACATATTACAGGCCATAACATTGAGAAAATACCCAGCAGAGATGTCTCTGGCCACTTGGGTTTGCTTTGTAGGAGCACTTCAAAGCTCTATTGTTGCAATCTTCGCAGAACGCCACCACCCTCATGCTTGGTCCCTTGGTTGGGATGCACGTCTCTTTGCTCCTGCTTACGCGGGAATAGTTACGTCTGGAGTTCAGTATTACATACAAGGCATGGTCTCAAAAATTATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTGCGTATGATCATTGTTACGGCCTTGGCCTGCATCATCTTATCTGAACAACTCTTCCTTGGAAGTATTATTGGAGCAATAGTTGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAAGCTAAAGAACGTAGAGGTCTGATGACACCGTCCCCTGCAGAAAATAACTTTCCAGAAGACCAACGACAGCTACCGGTCACAGCTCCAAGGAATGATAGCATTAACAATAATAATAAGGCTTAA
Predicted protein sequences of Glyma04g42990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g42990.1 sequence type=predicted peptide gene model=Glyma04g42990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTWFTNARPYLLLVAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASVSLAPFAFVLERKVRPKMTFRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFVMAVILRMEHMKIKEVACQAKVIGTVITFGGTLLMALYKGPVLSFMRSSTSHPSQPENVATETGNHWVIGTLFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSIVAIFAERHHPHAWSLGWDARLFAPAYAGIVTSGVQYYIQGMVSKIMGPVIVTAFNPLRMIIVTALACIILSEQLFLGSIIGAIVVVLGLYLVVWGKAKERRGLMTPSPAENNFPEDQRQLPVTAPRNDSINNNNKA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
