Glyma04g42970 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g42970

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48591142
stop:	48595154
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08290	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr4:5239088-5240861 FORWARD LENGTH=384	SoyBase	E_val: 2.00E-87	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7J315	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7J315_MEDTR	SoyBase	E_val: 2.00E-157	ISS
UniRef100_UPI000233A509	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A509 related cluster n=1 Tax=unknown RepID=UPI000233A509	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g42970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42970

Paralog	Evidence	Comments
Glyma06g11785	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g250700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g42970

Limit To All Plant Sequences

>Glyma04g42970.2   sequence type=CDS   gene model=Glyma04g42970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGGTGGTTCACAAATGCAAAGCCGTATCTGATGTTATTAGCAGTTCAATTTGGCTCAGCTGGGATGTTCATACTTGCCATGGATGCTATAAAGAAGGGTATGAGCCATTACGTGTTCATCGTCTACCGTAATGCCATCGCTTCTATGACTCTCGCTCCATTCGCATTTGTTCTTGAAAGGAAAGTTAGGTCCAAGATGACAGTCCGGATATTTTCTGAGATTATGGCGCTAGCTTTCTTCGAGGACCAAATTATAATTATGAAATGTGGGATAATGTATGGCAGTTACCGGTTTAAAGGTATAGTCTCATTTGTAGAGAGAGCAATATCTCAATGCCTACCGTTTTCTCCTTATCCATCAGAAGAGAAGAGAGACATTCACATAAAGAAAGACAAGGGTTCTCTACAATTAGAAGATCACAAAATCCAATTTTCTGATCAATCATCATCATCAGTCCAAACAAGAAAGGGTTCTATTTATTTCTGTACAGAGCACATGAAGATGAAGGAGGTAGCATGTCAAGCCAAAGTGATTGGAACAATAGTAACTTTTGGAGGCACCTTGCTTATGGCACTATACAAAGGCCCCTTACTTAGTAATGTGAACAACCCCACTGGTAACCACTGGATCCTGGGGACATGTTTCCTCCTCATTGGTTGTGCTGGCTTTTCTGCATTTTACATATTACAAACCATAACATTGAGAAAATACCCAACAGAGAAGTCCCTTGCCACTAGGGTTTGCTTTGTTGGTGCACTTCAAAGCTCTATTGTAGCAGCCATCGCTGAACGCCACCACCCTCATGCCTGGGCCCTTGGTTGGGATACACGACTCTTTGCTCCTGCTTATGCGGGAATAGTTACATCTGGAGTTCAGTATTACATACAAGGCATGGTCATAAAATCCATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTGCGTATGATCATTATTACAACCTTGGCCTGCATAGTCCTATCTGAGCAACTCTACCTTGGAAGTATTATTGGAGCGATAGTTGTGGTTCTTGGGCTCTATCTAGTTGTGTGGGGAAAATATAAAGAATGCCACGGAAGATCAATGCCACCGTCTCCGGAAAAGGATAACTTTCTTGAGGATCAACGACAGCTATCGGTCACAGTTCCTAAGAATGATACCAATGATAATAAGGGTTAA

Predicted protein sequences of Glyma04g42970

Limit To All Plant Sequences

>Glyma04g42970.2   sequence type=predicted peptide   gene model=Glyma04g42970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRWFTNAKPYLMLLAVQFGSAGMFILAMDAIKKGMSHYVFIVYRNAIASMTLAPFAFVLERKVRSKMTVRIFSEIMALAFFEDQIIIMKCGIMYGSYRFKGIVSFVERAISQCLPFSPYPSEEKRDIHIKKDKGSLQLEDHKIQFSDQSSSSVQTRKGSIYFCTEHMKMKEVACQAKVIGTIVTFGGTLLMALYKGPLLSNVNNPTGNHWILGTCFLLIGCAGFSAFYILQTITLRKYPTEKSLATRVCFVGALQSSIVAAIAERHHPHAWALGWDTRLFAPAYAGIVTSGVQYYIQGMVIKSMGPVIVTAFNPLRMIIITTLACIVLSEQLYLGSIIGAIVVVLGLYLVVWGKYKECHGRSMPPSPEKDNFLEDQRQLSVTVPKNDTNDNKG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain