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Report for Sequence Feature Glyma04g42941

Feature Type:gene_model
Chromosome:Gm04
Start:48555678
stop:48558958
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18340AT Annotation by Michelle Graham. TAIR10: basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301 SoyBaseE_val: 2.00E-131ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006366GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0000439GO-cc Annotation by Michelle Graham. GO Cellular Compartment: core TFIIH complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG2487 KOG RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 JGI ISS
PTHR12831Panther TRANSCRIPTION INITIATION FACTOR IIH (TFIIH), POLYPEPTIDE 3-RELATED JGI ISS
PF03850PFAM Transcription factor Tfb4 JGI ISS
UniRef100_G7J304UniRef Annotation by Michelle Graham. Most informative UniRef hit: General transcription factor IIH subunit n=1 Tax=Medicago truncatula RepID=G7J304_MEDTR SoyBaseE_val: 2.00E-175ISS
UniRef100_UPI000233A39FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A39F related cluster n=1 Tax=unknown RepID=UPI000233A39F SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42941 not represented in the dataset

Glyma04g42941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g11810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g250400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g42941.1   sequence type=CDS   gene model=Glyma04g42941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTGCTCCTTCCAAACTCTACGCAGATGACGTGAGCCTCCTCGTTGTGACGCTAGACACCAACCCTTTCTTCTGGAGCACTTTTCCCTTCCCCTTCGCCGAGTTCCTCTCTCAAGTACTCGCTTTTCTCAACACGATCTTGCTCCTAGGCCAGCTCAACCAGGTCATCGTCATCGCCACCGGATGCAACTCTTGCGGCTACGTTTACGATTCCACTTCCGACAAGAACCATGGCTCCACCACTGGTACAATGCCCGCGCTTTATTCCAATTTACTTCACAATCTCGACGAGTTTCTCGCTAGGGACCGGCAATTAGACGCCGACGCCTCTCACGCACCGGGAATCGTTCCTTCTTCGCTGTTATCGGGCTCCTTGTCCATGGCGCTTTGTTATATACAGAGAGCTTTTCGTTCGGGACCAATGCCTCCTCAGCCTCGGATTTTATGTTTGCAAGGGGCTGCTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATATTCTCTGCACAGCACTCTACAGTTCCTATAGATTCTTGTTATATTGGTTCAAACAATTCTGCATTCCTCCAGCAGGCTTCATACATAACTGGTGGAATATATTACAAGCCTCCCCAATTGGACGGGCTTTATCAATATCTTTCAACAGTGTTTGCAACTGATTTGCATTCTCGTGCATTTTTACGGCTTCCTAAATCTGTGGGTGTGGATTTTCGTGCCTCGTGTTTCTGCCATAAACAAACAATTGACATGGGCTATGTGTGTTCTGTATGCTTATCCATATTCTGTGAGCACCATGATAAGTGTTCAACCTGTGGGTAA

>Glyma04g42941.1   sequence type=predicted peptide   gene model=Glyma04g42941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVIATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPSSLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCG*







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