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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21880 | AT | Annotation by Michelle Graham. TAIR10: lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682526 FORWARD LENGTH=416 | SoyBase | E_val: 0 | ISS |
| GO:0006955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: immune response | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0016998 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0042834 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidoglycan binding | SoyBase | N/A | ISS |
| PTHR23354 | Panther | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED | JGI | ISS | |
| PTHR23354:SF38 | Panther | JGI | ISS | ||
| PF01476 | PFAM | LysM domain | JGI | ISS | |
| UniRef100_G7J302 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LysM domain-containing GPI-anchored protein n=1 Tax=Medicago truncatula RepID=G7J302_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JZ72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ72_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g42930 not represented in the dataset |
Glyma04g42930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g11820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g250300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42930.2 sequence type=transcript gene model=Glyma04g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAGTAAAAGGTTGAAATCTCTATGATCGAAGTAGAACTAGTGAGGAAACAGTGTCCTTCCTTGCGGCTCTATTCGTGAAATGCAAAACACCTGTCTCCTACTCTAAACTCCTCTTTCGTTCGCTTTTCCCCTCCCCCAACACAACACAACACAACACAACATTCTTTCGTGAAACTCAGAAAACCCTAAACCCCTCTCAAACCTTGTAGATTCCGACATCCTAGAATTAGTTACTGGTTTAGTAGCTTAGCTTCACTCACTTTCTATTTCTTCCAGAATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTATGTTTATCCTCTGTCTGCATACCTGCTGCATTTTCTGATTTACATATTCTAGTAATGTCT
>Glyma04g42930.1 sequence type=CDS gene model=Glyma04g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCCTCTCTTCAGCCTCGATGTCCAGGGCTGCAGGAATTCCCTCCCCTTGTTGCTCCACCTACAACCGTTGCAAGGGACACAGTGTTTGCACCAGCACCAGCACCACTGTTCGATGGAGCTGGTCCAGCATCACCCAAATCCTCGCTGGTGCCTTCAGCGGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGCGGCATTTCTTCCGGGGCTTCTGTTGCATGCTCCTTGGTGAAACCATTGCCCACTTTGACGAATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA >Glyma04g42930.2 sequence type=CDS gene model=Glyma04g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTATGTTTATCCTCTGTCTGCATACCTGCTGCATTTTCTGATTTACATATTCTAG
>Glyma04g42930.1 sequence type=predicted peptide gene model=Glyma04g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPNPKHIILQSFVFLCLLLQASSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTLSPSLQPRCPGLQEFPPLVAPPTTVARDTVFAPAPAPLFDGAGPASPKSSLVPSAGLPGGFSPANGPISGISSGASVACSLVKPLPTLTNALVLLLVKLMIPVAL* >Glyma04g42930.2 sequence type=predicted peptide gene model=Glyma04g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPNPKHIILQSFVFLCLLLQASSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTYVYPLSAYLLHFLIYIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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