Glyma04g42900 - SoyBase

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Report for Sequence Feature Glyma04g42900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48528145
stop:	48532416
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77610	AT	Annotation by Michelle Graham. TAIR10: EamA-like transporter family protein \| chr1:29165489-29167486 FORWARD LENGTH=336	SoyBase	E_val: 0	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015783	GO-bp	Annotation by Michelle Graham. GO Biological Process: GDP-fucose transport	SoyBase	N/A	ISS
GO:0015786	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucose transport	SoyBase	N/A	ISS
GO:0072334	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-galactose transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005457	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GDP-fucose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005459	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-galactose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005460	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_G7J2Z9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Solute carrier family 35 member E3 n=2 Tax=Medicago truncatula RepID=G7J2Z9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D4AC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D4AC related cluster n=1 Tax=unknown RepID=UPI000189D4AC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g42900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42900 not represented in the dataset	Glyma04g42900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42900

Paralog	Evidence	Comments
Glyma06g11850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g250000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g42900

Limit To All Plant Sequences

>Glyma04g42900.2   sequence type=transcript   gene model=Glyma04g42900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATCTTGAACTGTGACCGAATTGACCCCGAACCGGGGAGGTGGGAATAGCATGGGACCCACGAAGCAAAGCAGAAAGAAACATAAAATTTCCATGGCGTGACGGGGAGAGAGCCAAATCGAACCGAAAAGTTTCGAAATTACATACATAAAGAGGGAGAGAGAGGGGATGCAAATTCCATGAGAGCAGAAGAGGTGCCTCTTACTCCGTTACGAGTTCGACCCCTCCTCTCGCTCTTCTCTTCTCTTCTCTTCTCTTCATAGCAAAGCAATAATCCTATTAGAATATGGAAGAGAGCTTCGTTTTCCAGTGGAGCGTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGAAATTGGATTTCAAGTTTCCCTTATCAGTTTCCTGTGTCCACTTTATCTGTTCATCCATTGGAGCATATGTGGTAATTAAGTTGCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGATCGCTGGAGAAGAATCTTTCCAATGTCATTTGTGTTCTGTATTAACATTGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAGTCATTCACACCTGCCACCACAGTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTAACAGAGCTTAGTTTTAATATGTTTGGATTCTGTGCTGCCTTATTTGGCTGTTTGGCTACATCTACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGCTTCCTGCCATGTTACTTGAAGGCAATGGAATCCTTGAATGGCTAAATACTCATCCATATCCTTGGTCGGCTCTCATCATTATTTTTAGCTCCGGGGTGTTGGCTTTCTGTCTTAACTTCTCAATTTTTTATGTGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGGTAAGAACTACCCCGCGTAATGCTTCAACCATGATGAACAGCAATTGGTTCAATTAATGTATTTTTAGAAACTGTTCCAT

Coding sequences of Glyma04g42900

Limit To All Plant Sequences

>Glyma04g42900.1   sequence type=CDS   gene model=Glyma04g42900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCTTCGTTTTCCAGTGGAGCGTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGAAATTGGATTTCAAGTTTCCCTTATCAGTTTCCTGTGTCCACTTTATCTGTTCATCCATTGGAGCATATGTGGTAATTAAGTTGCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGATCGCTGGAGAAGAATCTTTCCAATGTCATTTGTGTTCTGTATTAACATTGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAGTCATTCACACCTGCCACCACAGTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTAACAGAGCTTAGTTTTAATATGTTTGGATTCTGTGCTGCCTTATTTGGCTGTTTGGCTACATCTACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGCTTCCTGCCATGTTACTTGAAGGCAATGGAATCCTTGAATGGCTAAATACTCATCCATATCCTTGGTCGGCTCTCATCATTATTTTTAGCTCCGGGGTGTTGGCTTTCTGTCTTAACTTCTCAATTTTTTATGTGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGTATTTAAATTCTGTTGGATGTACCGTGACTCTTGTGGGATGTACATTCTATGGTTATGTGAGGCACAAGCTCTCCCAACAGCCACAAGTCCCAGGAACTCCTCGGACACCCAGGACTCCCAGGACCCCTCGTAGTAAGATGGAGTTGCTTCCTCTTGTAAATGATAAATTAGAAGATAAGGTCTAG

>Glyma04g42900.2   sequence type=CDS   gene model=Glyma04g42900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCTTCGTTTTCCAGTGGAGCGTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGAAATTGGATTTCAAGTTTCCCTTATCAGTTTCCTGTGTCCACTTTATCTGTTCATCCATTGGAGCATATGTGGTAATTAAGTTGCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGATCGCTGGAGAAGAATCTTTCCAATGTCATTTGTGTTCTGTATTAACATTGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAGTCATTCACACCTGCCACCACAGTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTAACAGAGCTTAGTTTTAATATGTTTGGATTCTGTGCTGCCTTATTTGGCTGTTTGGCTACATCTACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGCTTCCTGCCATGTTACTTGAAGGCAATGGAATCCTTGAATGGCTAAATACTCATCCATATCCTTGGTCGGCTCTCATCATTATTTTTAGCTCCGGGGTGTTGGCTTTCTGTCTTAACTTCTCAATTTTTTATGTGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGGTAAGAACTACCCCGCGTAATGCTTCAACCATGATGAACAGCAATTGGTTCAATTAA

Predicted protein sequences of Glyma04g42900

Limit To All Plant Sequences

>Glyma04g42900.1   sequence type=predicted peptide   gene model=Glyma04g42900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESFVFQWSVIRSLLSILQWWAFNVTVIIVNKWIFQKLDFKFPLSVSCVHFICSSIGAYVVIKLLKLKPLITVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLIPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPFATMILALPAMLLEGNGILEWLNTHPYPWSALIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISYLNSVGCTVTLVGCTFYGYVRHKLSQQPQVPGTPRTPRTPRTPRSKMELLPLVNDKLEDKV*

>Glyma04g42900.2   sequence type=predicted peptide   gene model=Glyma04g42900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESFVFQWSVIRSLLSILQWWAFNVTVIIVNKWIFQKLDFKFPLSVSCVHFICSSIGAYVVIKLLKLKPLITVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLIPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPFATMILALPAMLLEGNGILEWLNTHPYPWSALIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVRTTPRNASTMMNSNWFN*

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