Report for Sequence Feature Glyma04g42850
Feature Type: gene_model
Chromosome: Gm04
Start: 48484508
stop: 48487182
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g42850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G21790 AT
Annotation by Michelle Graham. TAIR10: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:7654357-7655691 FORWARD LENGTH=288
SoyBase E_val: 2.00E-129 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4474
KOG
Uncharacterized conserved protein
JGI ISS
PF03798 PFAM
TLC domain
JGI ISS
UniRef100_G7J4X1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TLC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J4X1_MEDTR
SoyBase E_val: 2.00E-150 ISS
UniRef100_I1JZ62 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ62_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g42850
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g42850
Paralog Evidence Comments
Glyma06g11910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g42850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g249500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g42850
Coding sequences of Glyma04g42850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g42850.1 sequence type=CDS gene model=Glyma04g42850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGAGTGGCGCGAGAAGAAGCAATGGGTGGTGGAAAGCGGAACACGGTGGAGACATTCTTCTTAGCCACTCTAATTCTCTGGTTCGCTTCCCTTTGTTTCCAGATTTTGTTGAACAAGCGCTGGGAGCTTCTCTCTGTCATCGCGGGTTCTATCTTCTACCAGACATCTAACTGCCTCATCCGATTCTTCTCCCCACATAAAGACAAAGACGCTCTCTTCGTTAACACCTCCGTCTCTCTTCTCCACTCTCTCCTCACCTCCTCCTCAGTGATCTTCATCTTGTTCAGAGAGTTGTTAAGTAATGGGCCAAGTGGAATGTCTGACCACTCACAGTTGGTCGAAGATGCTTGGTCATGGGCATTTGAAGCGTTGAGCTTTTCTTGTGGTTACTTTGCATATGATCAGTGGGATATGCTTCATTACCGATTGTATAATGGTTGGATCCCCTCTATCCTTGTGCATCATCTGGTTCTCCTTATTTGCTTCACTCTTGCTTTGTATCGAAATGTTACCATCAACTACCTTATTCTCACTCTTATCTGTGAGCTGCATTCCATCTTTCTTCATTTGAGAAAAGTGAGAAGAATGGCCGGTATTCGGGATGCAAAGAGCATTCTTGTTAAGTTAGAATGGTTTTTGAATTGGGTTACCTTCTTTGTGGCAAGATCTGTACCTCACGTTCTCATCACAGCCAAGCTCATCAAGGATGCATACAAATTTGAAAAGGGTATGGAGCTACCACTGGCTCTGTTGGGCATGGCTGGGATGAATTTGCTCAACATTGGTCTTGGCATTGATCTCCTTAAAGCTTTTAAGAGAGAGCGGAAGTCTCAGCAGGGTAATCTTCATCATCACCGTGAATGA
Predicted protein sequences of Glyma04g42850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g42850.1 sequence type=predicted peptide gene model=Glyma04g42850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRVAREEAMGGGKRNTVETFFLATLILWFASLCFQILLNKRWELLSVIAGSIFYQTSNCLIRFFSPHKDKDALFVNTSVSLLHSLLTSSSVIFILFRELLSNGPSGMSDHSQLVEDAWSWAFEALSFSCGYFAYDQWDMLHYRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHLRKVRRMAGIRDAKSILVKLEWFLNWVTFFVARSVPHVLITAKLIKDAYKFEKGMELPLALLGMAGMNLLNIGLGIDLLKAFKRERKSQQGNLHHHRE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
