Glyma04g42740 - SoyBase

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Report for Sequence Feature Glyma04g42740

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48420173
stop:	48426206
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44170	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 3H1 \| chr1:16796564-16800031 REVERSE LENGTH=484	SoyBase	E_val: 0	ISS
GO:0006081	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular aldehyde metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0004029	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity	SoyBase	N/A	ISS
KOG2456	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF15	Panther	1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_I1JZ49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1JZ49_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JZ49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1JZ49_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g42740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42740 not represented in the dataset	Glyma04g42740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42740

Paralog	Evidence	Comments
Glyma06g12010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g248500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g42740

Limit To All Plant Sequences

>Glyma04g42740.2   sequence type=transcript   gene model=Glyma04g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAGTCGTGATTGAGGATAATCGTGTTACATTGGGAACAAAAAAAGTTGTCTGGCCCATTCAGGAGCACCAACTTCTTCAAAACGACAAATATGAACCCTACTGAGCCACATTAGCGTTGCTCTCGCACCGCCAAGCCACTGCACAGATAATGTTCCCATGGTATGATTCAGAGAGTCACGTCCTTGATTATTGGAGCAAGCACGCACGCTATCCTTATCTATCTCTTCTCTTCTTATTGCTCATTATTACGCGTCTCTCTCGTGTAGTATATATATACGTATGTGATAGTAATGTCGGGTGAGGAGACACAGAGGAATGTGTTTGGCGCGGAAACGGCGTCGTCCTTGGTGAAGGAGCTGAGGGACAACTTCGGTAAAGGAACCACGCGAAGTTACGAATGGAGAGTGTCGCAAGTGAAGGCTCTATTGAAGGCGGTGGTTGAAAACGAGGACCAGATCGTCGGTGCTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAGGTCAAAACGTCAATCAGAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCGCTGGGTGTCGTGTTAGTCATCTCTGCATGGAACTATCCAATCTTGTTGTCCCTTGATCCAGTAGTTGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCCGAAATTGCTCCGGCCACTTCATCAGTACTAGCAAAGTTGATAGAGAAGTATATGGATAACTCATTTGTAAGAGTTGTTGAGGGGGCAGTTGATGAAACAACTGCACTATTGCAGCAAAAGTGGAACAAGATTTTCTACACAGGTAATGGAAGAGTGGGAAAAATAGTGATGACTGCGGCTGCAAAACACCTTACACCAGTTGTACTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCAAACAACAATTTGCTGGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCAAGTTGGTGGATACCCTAAAGACTGAATTGGAGTCATTTTATGGAAGGAACCCGTTGGAATCTGAAGATTTGTCTCGAATTGTGAGTTCCAACCACTTTGCTCGCTTGTCAAAGCTCTTGAATGATGATAAGGTTTCTGGCAAGATTGTTTATGGAGGCGAAAAGGATGAAAAGAAATTAAGGATTGCTCCCACTATTTTATTGGATGTTCCGCAAGATTCTTCGATAATGGGTGAGGAGATATTTGGTCCATTGCTTCCCATCATCACGGTCAATAAGCTCGAAGAAAGTATAGATGTGATCAACTCAGGAGCAAAGCCCCTCGCTGCATATGTATTTACAACCGACAACAAGTTCAAGGAGCAGTTCGTAAAGAATGTTTCTGCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAGTTCTTTATCGCAGTTTTGCTGGGGATTCAGCAATAAGGTACCCACCATACACGGATACAAAACTGAGATTGATGAAGGCTCTCGTCGGTGGTCGTATCCTCGGAATAATTCGTGCTCTTTTCGGATGGTCCTAAGCTTAACTTGTTTTGAAACCTAGCTATTTTTTATGTATCTTTCGTTCTGGTTTTTTTGTACTTCATCATGCTGTGTAGCTTTATTATTATTTTTGTTTTTTTAGAAGAAAACCAATAGGCGAGAGTTGCGCATGAAAAAAGCAAAATAAATTAAATAATCATTGCTACTTTTCTTCGTGATTGTGTTAGATGTCTTGCGGTTGTAATGTGGCTAATGCCTTTTAGAGGCTATGCAGGCTGTGATACTATAAAATACTGTGTATATATGCACATATTAACATGCCTTTCACGGAAGGACAAGGCATGCATGCTCTTATGTATGTCATAAATTTATAATCCAGATTTTGCTAGCGATTTTGGTTTCTCATGGTGATAGTAGTGTTGTGAATCTGACATGTATTTTGAAGAGCACAGTATTATTAATATTGGAATTGAAAGCTGTGTGTTTGGAGTCAAC

Coding sequences of Glyma04g42740

Limit To All Plant Sequences

>Glyma04g42740.1   sequence type=CDS   gene model=Glyma04g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTGAGGAGACACAGAGGAATGTGTTTGGCGCGGAAACGGCGTCGTCCTTGGTGAAGGAGCTGAGGGACAACTTCGGTAAAGGAACCACGCGAAGTTACGAATGGAGAGTGTCGCAAGTGAAGGCTCTATTGAAGGCGGTGGTTGAAAACGAGGACCAGATCGTCGGTGCTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAGGTCAAAACGTCAATCAGAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCGCTGGGTGTCGTGTTAGTCATCTCTGCATGGAACTATCCAATCTTGTTGTCCCTTGATCCAGTAGTTGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCCGAAATTGCTCCGGCCACTTCATCAGTACTAGCAAAGTTGATAGAGAAGTATATGGATAACTCATTTGTAAGAGTTGTTGAGGGGGCAGTTGATGAAACAACTGCACTATTGCAGCAAAAGTGGAACAAGATTTTCTACACAGGTAATGGAAGAGTGGGAAAAATAGTGATGACTGCGGCTGCAAAACACCTTACACCAGTTGTACTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCAAACAACAATTTGCTGGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCAAGTTGGTGGATACCCTAAAGACTGAATTGGAGTCATTTTATGGAAGGAACCCGTTGGAATCTGAAGATTTGTCTCGAATTGTGAGTTCCAACCACTTTGCTCGCTTGTCAAAGCTCTTGAATGATGATAAGGTTTCTGGCAAGATTGTTTATGGAGGCGAAAAGGATGAAAAGAAATTAAGGATTGCTCCCACTATTTTATTGGATGTTCCGCAAGATTCTTCGATAATGGGTGAGGAGATATTTGGTCCATTGCTTCCCATCATCACGGTCAATAAGCTCGAAGAAAGTATAGATGTGATCAACTCAGGAGCAAAGCCCCTCGCTGCATATGTATTTACAACCGACAACAAGTTCAAGGAGCAGTTCGTAAAGAATGTTTCTGCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAGTTCTTTATCGCAGTTTTGCTGGGGATTCAGCAATAAGGTACCCACCATACACGGATACAAAACTGAGATTGATGAAGGCTCTCGTCGGTGGTCGTATCCTCGGAATAATTCGTGCTCTTTTCGGATGGTCCTAA

>Glyma04g42740.2   sequence type=CDS   gene model=Glyma04g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTGAGGAGACACAGAGGAATGTGTTTGGCGCGGAAACGGCGTCGTCCTTGGTGAAGGAGCTGAGGGACAACTTCGGTAAAGGAACCACGCGAAGTTACGAATGGAGAGTGTCGCAAGTGAAGGCTCTATTGAAGGCGGTGGTTGAAAACGAGGACCAGATCGTCGGTGCTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAGGTCAAAACGTCAATCAGAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCGCTGGGTGTCGTGTTAGTCATCTCTGCATGGAACTATCCAATCTTGTTGTCCCTTGATCCAGTAGTTGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCCGAAATTGCTCCGGCCACTTCATCAGTACTAGCAAAGTTGATAGAGAAGTATATGGATAACTCATTTGTAAGAGTTGTTGAGGGGGCAGTTGATGAAACAACTGCACTATTGCAGCAAAAGTGGAACAAGATTTTCTACACAGGTAATGGAAGAGTGGGAAAAATAGTGATGACTGCGGCTGCAAAACACCTTACACCAGTTGTACTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCAAACAACAATTTGCTGGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCAAGTTGGTGGATACCCTAAAGACTGAATTGGAGTCATTTTATGGAAGGAACCCGTTGGAATCTGAAGATTTGTCTCGAATTGTGAGTTCCAACCACTTTGCTCGCTTGTCAAAGCTCTTGAATGATGATAAGGTTTCTGGCAAGATTGTTTATGGAGGCGAAAAGGATGAAAAGAAATTAAGGATTGCTCCCACTATTTTATTGGATGTTCCGCAAGATTCTTCGATAATGGGTGAGGAGATATTTGGTCCATTGCTTCCCATCATCACGGTCAATAAGCTCGAAGAAAGTATAGATGTGATCAACTCAGGAGCAAAGCCCCTCGCTGCATATGTATTTACAACCGACAACAAGTTCAAGGAGCAGTTCGTAAAGAATGTTTCTGCCGGGGGTTTGCTCGTCAATGACACTGCCTTACATCTTGTGGTTGATACCTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAAGCAGTTCTTTATCGCAGTTTTGCTGGGGATTCAGCAATAAGGTACCCACCATACACGGATACAAAACTGAGATTGATGAAGGCTCTCGTCGGTGGTCGTATCCTCGGAATAATTCGTGCTCTTTTCGGATGGTCCTAA

Predicted protein sequences of Glyma04g42740

Limit To All Plant Sequences

>Glyma04g42740.1   sequence type=predicted peptide   gene model=Glyma04g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEETQRNVFGAETASSLVKELRDNFGKGTTRSYEWRVSQVKALLKAVVENEDQIVGALCSDLAKPPLETVVYEIGMFQNSCEVILKELKHWMTPEKVKTSIRTFPSSAEIVPEPLGVVLVISAWNYPILLSLDPVVGAIAAGNAVVLKPSEIAPATSSVLAKLIEKYMDNSFVRVVEGAVDETTALLQQKWNKIFYTGNGRVGKIVMTAAAKHLTPVVLELGGKSPVVVDSNNNLLVAARRIIAGKWGLNNGQACISPDYVITTKDYAPKLVDTLKTELESFYGRNPLESEDLSRIVSSNHFARLSKLLNDDKVSGKIVYGGEKDEKKLRIAPTILLDVPQDSSIMGEEIFGPLLPIITVNKLEESIDVINSGAKPLAAYVFTTDNKFKEQFVKNVSAGGLLVNDTALHLVVDTLPFGGVGESGMGAYHGKFSFDAFTHKKAVLYRSFAGDSAIRYPPYTDTKLRLMKALVGGRILGIIRALFGWS*

>Glyma04g42740.2   sequence type=predicted peptide   gene model=Glyma04g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEETQRNVFGAETASSLVKELRDNFGKGTTRSYEWRVSQVKALLKAVVENEDQIVGALCSDLAKPPLETVVYEIGMFQNSCEVILKELKHWMTPEKVKTSIRTFPSSAEIVPEPLGVVLVISAWNYPILLSLDPVVGAIAAGNAVVLKPSEIAPATSSVLAKLIEKYMDNSFVRVVEGAVDETTALLQQKWNKIFYTGNGRVGKIVMTAAAKHLTPVVLELGGKSPVVVDSNNNLLVAARRIIAGKWGLNNGQACISPDYVITTKDYAPKLVDTLKTELESFYGRNPLESEDLSRIVSSNHFARLSKLLNDDKVSGKIVYGGEKDEKKLRIAPTILLDVPQDSSIMGEEIFGPLLPIITVNKLEESIDVINSGAKPLAAYVFTTDNKFKEQFVKNVSAGGLLVNDTALHLVVDTLPFGGVGESGMGAYHGKFSFDAFTHKKAVLYRSFAGDSAIRYPPYTDTKLRLMKALVGGRILGIIRALFGWS*

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