Glyma04g42670 - SoyBase

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Report for Sequence Feature Glyma04g42670

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48357995
stop:	48363760
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69740	AT	Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein \| chr1:26232197-26234713 FORWARD LENGTH=430	SoyBase	E_val: 0	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006779	GO-bp	Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0033014	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrapyrrole biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004655	GO-mf	Annotation by Michelle Graham. GO Molecular Function: porphobilinogen synthase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG2794	KOG	Delta-aminolevulinic acid dehydratase	JGI		ISS
PTHR11458	Panther	PORPHOBILINOGEN SYNTHASE	JGI		ISS
PF00490	PFAM	Delta-aminolevulinic acid dehydratase	JGI		ISS
UniRef100_P43210	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Delta-aminolevulinic acid dehydratase, chloroplastic n=1 Tax=Glycine max RepID=HEM2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P43210	UniRef	Annotation by Michelle Graham. Best UniRef hit: Delta-aminolevulinic acid dehydratase, chloroplastic n=1 Tax=Glycine max RepID=HEM2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g42670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42670

Paralog	Evidence	Comments
Glyma06g12110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g247700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g42670

Limit To All Plant Sequences

>Glyma04g42670.2   sequence type=CDS   gene model=Glyma04g42670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGCTTCTTCAATCCCTAATGCGCCTTCTGCGTTCAATTCTCAGAGCTACGTTGGTCTCAGAGCGCCACTGAGGACCTTCAACTTTTCTTCTCCTCAAGCTGCCAAAATTCCTCGCTCCCAACGCCTTTTCGTCGTCAGAGCCTCCGATTCGGAGTTCGAAGCCGCCGTTGTCGCCGGTAAGGTTCCGCCGGCGCCTCCCGTGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTTCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCGGCTTTTCAGGAAACGAGCATTTCGCCGGCGAATTTCGTGTATCCGCTTTTCATTCACGAAGGTGAAGAGGATACTCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAGTCTCCCACAGGAGATGAAGCATACAATGAAAATGGTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTGTTATCTATACAGATGTTGCATTAGATCCTTATTCATCAGATGGGCATGATGGCATAGTTAGAGAAGATGGAGTTATTATGAATGATGAGACAGTTCATCAGCTATGTAAACAAGCTGTAGCCCAGGCCCAAGCTGGAGCAGATGTTGTCAGTCCTAGTGATATGATGGATGGTCGGGTAGGAGCACTGCGTGCAGCTCTGGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCCTATACAGCAAAGTATGCAAGTTCTTTTTATGGTCCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTGGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAGACGAAGAAAAGGTTATGATGGAGTCACTGATGTGCCTCCGAAGGGCCGGTGCTGATATCATCCTCACATATTCTGCTCTGCAAGCTGCCAGATGTTTGTGTGGAGAGAAGAGGTGA

Predicted protein sequences of Glyma04g42670

Limit To All Plant Sequences

>Glyma04g42670.2   sequence type=predicted peptide   gene model=Glyma04g42670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMASSIPNAPSAFNSQSYVGLRAPLRTFNFSSPQAAKIPRSQRLFVVRASDSEFEAAVVAGKVPPAPPVPPRPAAPVGTPVVPSLPLHRRPRRNRKSPALRSAFQETSISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEESPTGDEAYNENGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQAQAGADVVSPSDMMDGRVGALRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYAMIKAAGALKMIDEEKVMMESLMCLRRAGADIILTYSALQAARCLCGEKR*

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