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Report for Sequence Feature Glyma04g42601

Feature Type:gene_model
Chromosome:Gm04
Start:48302017
stop:48309569
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g42601
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21700AT Annotation by Michelle Graham. TAIR10: SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807 SoyBaseE_val: 0ISS
GO:0006338GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin remodeling SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0040029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016514GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SWI/SNF complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1279 KOG Chromatin remodeling factor subunit and related transcription factors JGI ISS
PTHR12802Panther SWI/SNF COMPLEX-RELATED JGI ISS
PTHR12802:SF21Panther SUBFAMILY NOT NAMED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
PF04433PFAM SWIRM domain JGI ISS
UniRef100_B9H7H8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=2 Tax=Populus trichocarpa RepID=B9H7H8_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A500UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A500 related cluster n=1 Tax=unknown RepID=UPI000233A500 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g42601
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42601 not represented in the dataset
Glyma04g42601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42601
ParalogEvidenceComments
Glyma06g12170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42601 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g247200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g42601
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g42601
>Glyma04g42601.1   sequence type=CDS   gene model=Glyma04g42601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCCTCTCCTTCAGAGAACCGAACCAGATGGAGGAAGCGCAAGAGAGATTCGCAAATCAGCCGGCGCCACCAGAAGCACGAGGAGGACGACGACGACGACGACGAAAACCCCAATGCGGAGGAAGACCTCGCCGAACGCGACTACGATTCGGAGGACCAAACGCACCACAACCACCCTAATTCGCAACCTCACGTGGAGACGGAGGTCCTCTCCGACCACGGCGTTCAGATTTCGCAGTTCCCGGCGGTGATAAAGCGCTCCGTGAACCGCCCTCACTCCTCCGTCACCGCAATTGTTGCTCTGGAGCGTGCCCTCGAGTCCGGAGAGAATAAGGCTCCAAGCGCTCTCGCTGCTCCGGTTCTCGAAAACGTGTCTCACGGCCAGCTTCAAGCGCTGTCGTCTGTTCCCTCTGATAGCTTTGCTTTCGACGGTGATTCCTCTTTTGTCATCACTCCCCCTCCCATTTTGGAAGGTCGTGGCGTTGTTAAGCGCTATGGAACTAAGGCTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCCACGGTGCACAGGTTGGAGAGGCAAGTGGTGCCGCATTTCTTTTCAGGGAAATCTCCGGATCATACTCCGGAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCCTTGCACATGGAGGACCCAGGGAAGAGGATTACGGTTTCTGATTGCAAGGGTTTGTTGGCTGGGGTTAATGTTGAAGATTTGACTCGGATTGTTAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCGGATGCCGAGTCATGAGTCTCCCAATGCTGTGTCTTGCCTAAGGGAGGAGACGAGTGGAGAGGTCCGTGTACCATCGGAGGCTTTGAAATCTATAGACAGTTTGATCAAATTTGACAAGCCCAACTGTAAACTGAAAGCAGACGAAATTTATTCGTCGTTGTCTGCACATAGTGCCGATGTCTTAGATCTGGAGGACAGAATAAGAGAGCATCTATCAGAGAATCACTGCAATTATTGTTCTTGTCCTCTTCCTGTTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTGTAAGGGTGGATTCGACTAGGGATTATGGTGAACTAGATGGGGATAGTTGGACTGATCAAGAAACTTTGCTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATTAACGTTCCAAGCATGTCTTTGTCATCCAATGCAATAAATAGAGATCATAGTGGAAGACTGCATTGTTACTCAAATGGAGATACTGCAGGAACTGTCCATCAAACCAGAGATTCTGACAATCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCTTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACGTCACAAATGGAAGCACCGGGACATGATAATAGGACAAATTCAGAAAACATACATTGTCGAGATGGTGGCCCTCATGGAGAAACAGCAGTTTCAAATAATCATAATGAGGATAAGGCAAAGGTGCGTGGTTCATGGGGTCTGAATGAGGGTAGGATAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCGGCTAAAGCAGGCCTTTCTGCTGCAGCAATGAAAGCAAAATTATTTGCCGATCATGAAGAACGTGAAATTCAGAGGTTATGTGCTAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAAAGGTGTGCTGCTGATCGGTCCCGCATAATGTCAGCACGTCTTGGAACTGTAGGAGCCACACCCACAATGAATGCATCGGGTGTTGGTCCCTCAATGGCTAGTAATGGCAACAATAGGCAACAGATGATCTCTGCTTCTTCTTCACAGCCCAGCGTCTCAGGGTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAACCAGCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGTCTGTATCGGGAACTAACTCTGGTTTAGGTTAA
Predicted protein sequences of Glyma04g42601
>Glyma04g42601.1   sequence type=predicted peptide   gene model=Glyma04g42601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPASPSENRTRWRKRKRDSQISRRHQKHEEDDDDDDENPNAEEDLAERDYDSEDQTHHNHPNSQPHVETEVLSDHGVQISQFPAVIKRSVNRPHSSVTAIVALERALESGENKAPSALAAPVLENVSHGQLQALSSVPSDSFAFDGDSSFVITPPPILEGRGVVKRYGTKALVVPMHSDWFSPATVHRLERQVVPHFFSGKSPDHTPEKYMECRNCIVALHMEDPGKRITVSDCKGLLAGVNVEDLTRIVRFLDHWGIINYCVRMPSHESPNAVSCLREETSGEVRVPSEALKSIDSLIKFDKPNCKLKADEIYSSLSAHSADVLDLEDRIREHLSENHCNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSNAINRDHSGRLHCYSNGDTAGTVHQTRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQMEAPGHDNRTNSENIHCRDGGPHGETAVSNNHNEDKAKVRGSWGLNEGRITPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRCAADRSRIMSARLGTVGATPTMNASGVGPSMASNGNNRQQMISASSSQPSVSGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQPASSTAMFNAPSNVQPTTNHPLLRSVSGTNSGLG*






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