SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G44110 | AT | Annotation by Michelle Graham. TAIR10: Cyclin A1;1 | chr1:16775035-16777182 REVERSE LENGTH=460 | SoyBase | E_val: 0 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051329 | GO-bp | Annotation by Michelle Graham. GO Biological Process: interphase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016538 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0654 | KOG | G2/Mitotic-specific cyclin A | JGI | ISS | |
| PTHR10177 | Panther | CYCLINS | JGI | ISS | |
| PTHR10177:SF49 | Panther | G2/MITOTIC-SPECIFIC CYCLIN | JGI | ISS | |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | ISS | |
| PF02984 | PFAM | Cyclin, C-terminal domain | JGI | ISS | |
| UniRef100_Q39879 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39879_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q39879 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39879_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g42540 not represented in the dataset |
Glyma04g42540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g246600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42540.1 sequence type=CDS gene model=Glyma04g42540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACCCAGAATCGTCGCTCGTCGTTTTCCTCCTCAACGACGTCGTCTTTGGCCAAACGCCATGCATCCGCCTCAACGACGTCGTCTTTGGCCGCCGCTCCTACAAACATGGCCAAGAAGCGGCCTCCTCTCTCCAACCTCACCAACACCGTTGCTCACCGCAACTCTTCCTCTTCGGTTCCATGCGCAGCTAAATTTGCCAAGACCAAGAAAGACGTTGTTCCGGCGTGTTCAGGGAACAAAAGGCCCACATTGGCGAATGTGAAACCCGCTAGCGCAGTTATTTTTCCGAAGGCTAATTCTTTCCCTGTAAAGAATGAAGCTCCACCAACTCCTCCTCCTCCAGTTGCCACCGTTACTGTTCCGGCTCCGGTGGTGGATGTTTCACCTAGTAAATCAGATACAATGTCCGTTTCTACGGATGAGTCAATGTCCTCTTGTGACTCCTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTTGCAGCCGTTGATTCAATTGAGAGGAAAACATTCAGCCATCTCAACATCTCTGATTCTACAGAAGGGAACATATGTAGTAGAGAGATACTTGTTGAGTTGGAGAAGGGGGACAAATTTGTCAATGTTGATAATAATTACGCGGATCCTCAGCTCTGTGCAACCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAAAATTCAGAAGGAGATAAACTCCAGCATGCGTGCTATATTGATTGACTGGCTTGTCGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTATCAGGGAATGTGATGAACAGACAAAGGTTACAGTTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATACGAGGAAATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTGAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTAAGAAGATTTGTTCGTGCAGCTCAAGGAGTTGATGAGGTCCCTTCGCTACAACTAGAGTGCTTGACAAACTATATTGCTGAATTGTCTCTCATGGAGTACAGTATGCTTGGTTATGCTCCATCACTTGTAGCCGCTTCAGCAATTTTCCTGGCCAAATTCATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTACAGCATTACACCTTGTACCAGCCTTCTGATCTGTGTGTCTGCGTAAAGGATCTTCACCGTCTTTGTTGCAACAGCCCTAATTCTAATTTGCCTGCAATTAGGGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTTCAGAATTGA
>Glyma04g42540.1 sequence type=predicted peptide gene model=Glyma04g42540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTQNRRSSFSSSTTSSLAKRHASASTTSSLAAAPTNMAKKRPPLSNLTNTVAHRNSSSSVPCAAKFAKTKKDVVPACSGNKRPTLANVKPASAVIFPKANSFPVKNEAPPTPPPPVATVTVPAPVVDVSPSKSDTMSVSTDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSHLNISDSTEGNICSREILVELEKGDKFVNVDNNYADPQLCATFACDIYKHLRASEAKKRPSTDFMEKIQKEINSSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLMEYSMLGYAPSLVAASAIFLAKFILFPSKKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFQN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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