SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21660 | AT | Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr1:7605924-7608835 FORWARD LENGTH=523 | SoyBase | E_val: 2.00E-116 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| KOG0431 | KOG | Auxilin-like protein and related proteins containing DnaJ domain | JGI | ISS | |
| PTHR23172 | Panther | AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED | JGI | ISS | |
| PTHR23172:SF31 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_D7KK36 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KK36_ARALL | SoyBase | E_val: 1.00E-120 | ISS |
| UniRef100_UPI000233A4FE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A4FE related cluster n=1 Tax=unknown RepID=UPI000233A4FE | SoyBase | E_val: 0 | ISS |
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Glyma04g42501 not represented in the dataset |
Glyma04g42501 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g246200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42501.1 sequence type=CDS gene model=Glyma04g42501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGAGTTCGGCGTTTTGACCGAAAGGTTCGGTCTCAAACCACAAGGAAAATCCGCTCCAATGGCTAGGGCAAAGCGACCTCCGAATGTCGCTGATTCCCAAACACGCCCCAATTCCAAATCCCCCCTTAACGGATCCCCGTCTCACCAAAACTCCACCTTCGATTTCGATTACGGCTTTTTCAGCAGCAGCAACAACAGCAACACCGACAACAAAACGCAGCGTTTCGACGACATCTTTGGCGTAGACGCCAAATCCAATGGCGCTTCGTTCGACTACGATTCCATATTCTCCGGATCGAACAAACCGGTTTCCGCGTCATCTTATGTGGATGACATATTCGGTGGAATGCATGAGAAGAGTGTCGGCGTTGATGATCTGCTTGATAAGATTGGCGGGTTAAACACCAACGCTAAGAGTCCAAACACAAAAACACCTGCTTTTGATTATTTGATCCCTGGCTTTGGTGTTTCAAATAATGGTGTTGAGATGAACAAGCAAAGTGTTACTCCAAACAAGCCTGCTGCGGCGGCGTCTCAGGATGATCCGTTTTTGATATTTGAAACTGCTTCAAGCTCGGCATCTTCAGAATCATTCCTGAACGCGCTGGAGCAGATTAGTAGGTCGAATAATTCTAAGGGGACAAAAGGAGGGTCCCCATCATTGAAGTCTCCACCCAAGCCAATGAGTAAAGTTAATAGGCCGAGTGTATCAACAATAGATGAGCTTGAGGACTTTGCCATGGGTGGGGCACAGACTAATGCTAGTAGTAGAAAGGCCAATGTTAACGCCGCTGAGACTAAACAAAACTTGGCGGCTAGGATGAACAATGGTAAAAGAGTTCCAGCTGCGAGAGTGAATCAGGCAAATGGCGTGGATGATCTTGAATCCTTTTTCAGCATGGGCTCTCGATCAAGCAGCGTGCCAAAGTCAAGGACTCCAACTATGGATCATATGTATGATAACCAAATGAAGAACAAAGAGAGACCTGAGGTGTCACCAAGAGTGCCATCTAGATCCTCAGCAAGCGTGAATAAATCTCCAGTGATGACATCCCTTGATGACCTGTCATTGATGTTCGGTGGTTCCCCATCATCTGAATTCCAGGAGGTTGAAGGGGAAACTGAAGAAAGACGAAAAGCAAGATTAGGACGTCATCAGAGAGCACAAGAGCGAGCGTTAAAAGCAGTGAATGATATGAACCAGCGTGACCTTCAAACTAAGATGGAGCAAGAAGAGAGGCGGAAAATTGCTGATACTGCAGATGTTCAGATAAAGCGCTGGGCTGCAGGGAAAGAAGGCAATATGCGGGCATTGCTATCAACATTACAATATGTTCTTTGGCCAGAATGTGGTTGGCAGCCAGTTTCTCTGACAGATATGATTACCTCTTCGGCAGTTAAAAAAGTTTATAGAAAAGCAAATTTATGTATTCACCCAGATAAAGTCCAGCAGAAAGGGGCTACTCTTGAACAGAAATACACAGCGGAGAAGGTTTTTGACATTCTTAAGGAAGCTTACACCAAGTTCAATGCGGAAGAGCTTTCTTAG
>Glyma04g42501.1 sequence type=predicted peptide gene model=Glyma04g42501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDEFGVLTERFGLKPQGKSAPMARAKRPPNVADSQTRPNSKSPLNGSPSHQNSTFDFDYGFFSSSNNSNTDNKTQRFDDIFGVDAKSNGASFDYDSIFSGSNKPVSASSYVDDIFGGMHEKSVGVDDLLDKIGGLNTNAKSPNTKTPAFDYLIPGFGVSNNGVEMNKQSVTPNKPAAAASQDDPFLIFETASSSASSESFLNALEQISRSNNSKGTKGGSPSLKSPPKPMSKVNRPSVSTIDELEDFAMGGAQTNASSRKANVNAAETKQNLAARMNNGKRVPAARVNQANGVDDLESFFSMGSRSSSVPKSRTPTMDHMYDNQMKNKERPEVSPRVPSRSSASVNKSPVMTSLDDLSLMFGGSPSSEFQEVEGETEERRKARLGRHQRAQERALKAVNDMNQRDLQTKMEQEERRKIADTADVQIKRWAAGKEGNMRALLSTLQYVLWPECGWQPVSLTDMITSSAVKKVYRKANLCIHPDKVQQKGATLEQKYTAEKVFDILKEAYTKFNAEELS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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