SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77350 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29070497-29071 | SoyBase | E_val: 8.00E-58 | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4615 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF09775 | PFAM | Keratinocyte-associated protein 2 | JGI | ISS | |
| UniRef100_B6SJ34 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Keratinocytes-associated protein 2 n=2 Tax=Andropogoneae RepID=B6SJ34_MAIZE | SoyBase | E_val: 4.00E-46 | ISS |
| UniRef100_I1JZ21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JZ21_SOYBN | SoyBase | E_val: 3.00E-91 | ISS |
|
Glyma04g42480 not represented in the dataset |
Glyma04g42480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12301 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g246100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42480.2 sequence type=transcript gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTAAAAGTATTTTTGTGGAAAAAAACAAACACTACTGAATATTTATCAAGGATTGGATTCCCAAATTGCCCTCCGGTATTTGACTCGTGCGTTTATTAAAACGACGATCGCGTGTTGCTCGAGATCTGAACTGAAACCGCTGCTTCCGATCTGAGGCCATGGCGGGGTCTGGGAGTTCCATGCTATATTCCTTTCTTCTCTTCACAGTCATTCTCTCACTTCAAGAAATGTACCGAGGGAAACTAGCATCATCAGAATTATACACTATACTTGGAGGGTTCGTTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAAACAATTGGTGCAAGAACTGGTTGGGGAGCTGTCATTGTTGCAGAAGCTGTTGCTCTGATTGCTGCAAGCACTGTCCACCGAGTTTGCATCACTACATGTTTCCTGTTCTCGGCTGCATTGCTGTATGAGGTTAACAAGATCTCTGGGTCAGCGCTTTCAACAAGTGACTCCAGGACTAAAAAGCAAAGTGGAAGAGCTTAAGCCTATGTATGCTTACTATAAAGGCGCATTTAGAAAATTTTCCCCAGGAGCATTAGTTTTATAACCCTAGTAGCAAAACTTATAAGAAGAGTGTTTTAAGTTTGTATGACTTTTCACTGTACAATTTCAATGATATGATTTGAATTTTGAAAGAGGTGCCTCTAACTAAAAACCGATCAGACATTTTTTCTCACAGGTGGCTCTCTCTACTAAATCAAATAATGCCAAAACGAGTTACGAGGGAT >Glyma04g42480.3 sequence type=transcript gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTTCACTTCTCTTATTCTTTCCTTGTTTTCTGTGAAAATGCGAGAGTTAGAGGGAATTAAATTGATGGATTTGATCTCGAATTCCCCGATGCTTCTGTTGTGCTTGTTTGTAGGGCGAATTGTTGTTTATATTTGATGAAATTCGGCTCGCGTAGCTTGGAGTTAGGGTTTTTGGTCAGTTGTTATATTTACCCTTGGGATCGGTGTGCCTTCATAACATTGTTGGATTCATCGAGCTTTAGTTGTTGACATTTAGTTTTTCGCGAACTTCGTAGCTTAGCTACTTATAAATATTGAATATCCGTCACTTTAGTCTAGCTGATTTGTTACAGTAAATTTTAGGAACCAATTTGAAGGGTTTTTAATATTTTGGGGACTACATAGTACTTAGCATGATTTCTCATAGTTTTAGGACTATTCAAGTAATTTTTATGCTGTAAGGACTACTTAATAGAGTGAGTAATAATTCAAGAATAAAATTGGTGGTTTACTAGTTTGAAACTTATCAAGCCTGACTTACTTGCTATTCCTGTTTTTCGTGAAGAGAAGCTTGCCGTATTGCACTGTAAAGAGCGTTTTCATGTCATGGATGAAAACATTTAAGTGGATTTTTTTAATCAAAATATGTTTTATTGGATTATACTTGTAGCCACTAGAGATCTGTGGCTGCTTGGATCCACGGCAAGCATATGTTGTAATTTTGGTATAATGTGCTTTATATACTTAAGTGCTGTTTCAGCTTGCAACTCAGTGATGGATGATAGTACTTTTTCCTGTTATTCTCACAATTGTTTCTGTGTTCACGATTGCTGAACTTGCAATGAGAAGGCCATGGCGGGGTCTGGGAGTTCCATGCTATATTCCTTTCTTCTCTTCACAGTCATTCTCTCACTTCAAGAAATGTACCGAGGGAAACTAGCATCATCAGAATTATACACTATACTTGGAGGGTTCGTTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAAACAATTGGTGCAAGAACTGGTTGGGGAGCTGTCATTGTTGCAGAAGCTGTTGCTCTGATTGCTGCAAGCACTGTCCACCGAGTTTGCATCACTACATGTTTCCTGTTCTCGGCTGCATTGCTGTATGAGGTTAACAAGATCTCTGGGTCAGCGCTTTCAACAAGTGACTCCAGGACTAAAAAGCAAAGTGGAAGAGCTTAAGCCTATGTATGCTTACTATAAAGGCGCATTTAGAAAATTTTCCCCAGGAGCATTAGTTTTATAACCCTAGTAGCAAAACTTATAAGAAGAGTGTTTTAAGTTTGTATGACTTTTCACTGTACAATTTCAATGATATGATTTGAATTTTGAAAGAGGTGCCTCTAACTAAAAACCGATCAGACATTTTTTCTCACAGGTGGCTCTCTCTACTAAATCAAATAATGCCAAAACGAGTTACGAG
>Glyma04g42480.1 sequence type=CDS gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTCGGCTCGCGTAGCTTGGAGTTAGGGTTTTTGGCCATGGCGGGGTCTGGGAGTTCCATGCTATATTCCTTTCTTCTCTTCACAGTCATTCTCTCACTTCAAGAAATGTACCGAGGGAAACTAGCATCATCAGAATTATACACTATACTTGGAGGGTTCGTTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAAACAATTGGTGCAAGAACTGGTTGGGGAGCTGTCATTGTTGCAGAAGCTGTTGCTCTGATTGCTGCAAGCACTGTCCACCGAGTTTGCATCACTACATGTTTCCTGTTCTCGGCTGCATTGCTGTATGAGGTTAACAAGATCTCTGGGTCAGCGCTTTCAACAAGTGACTCCAGGACTAAAAAGCAAAGTGGAAGAGCTTAA >Glyma04g42480.2 sequence type=CDS gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGGTCTGGGAGTTCCATGCTATATTCCTTTCTTCTCTTCACAGTCATTCTCTCACTTCAAGAAATGTACCGAGGGAAACTAGCATCATCAGAATTATACACTATACTTGGAGGGTTCGTTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAAACAATTGGTGCAAGAACTGGTTGGGGAGCTGTCATTGTTGCAGAAGCTGTTGCTCTGATTGCTGCAAGCACTGTCCACCGAGTTTGCATCACTACATGTTTCCTGTTCTCGGCTGCATTGCTGTATGAGGTTAACAAGATCTCTGGGTCAGCGCTTTCAACAAGTGACTCCAGGACTAAAAAGCAAAGTGGAAGAGCTTAA >Glyma04g42480.3 sequence type=CDS gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGGTCTGGGAGTTCCATGCTATATTCCTTTCTTCTCTTCACAGTCATTCTCTCACTTCAAGAAATGTACCGAGGGAAACTAGCATCATCAGAATTATACACTATACTTGGAGGGTTCGTTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAAACAATTGGTGCAAGAACTGGTTGGGGAGCTGTCATTGTTGCAGAAGCTGTTGCTCTGATTGCTGCAAGCACTGTCCACCGAGTTTGCATCACTACATGTTTCCTGTTCTCGGCTGCATTGCTGTATGAGGTTAACAAGATCTCTGGGTCAGCGCTTTCAACAAGTGACTCCAGGACTAAAAAGCAAAGTGGAAGAGCTTAA
>Glyma04g42480.1 sequence type=predicted peptide gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFGSRSLELGFLAMAGSGSSMLYSFLLFTVILSLQEMYRGKLASSELYTILGGFVSSLLFLVLLTFIGNFQETIGARTGWGAVIVAEAVALIAASTVHRVCITTCFLFSAALLYEVNKISGSALSTSDSRTKKQSGRA* >Glyma04g42480.2 sequence type=predicted peptide gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGSGSSMLYSFLLFTVILSLQEMYRGKLASSELYTILGGFVSSLLFLVLLTFIGNFQETIGARTGWGAVIVAEAVALIAASTVHRVCITTCFLFSAALLYEVNKISGSALSTSDSRTKKQSGRA* >Glyma04g42480.3 sequence type=predicted peptide gene model=Glyma04g42480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGSGSSMLYSFLLFTVILSLQEMYRGKLASSELYTILGGFVSSLLFLVLLTFIGNFQETIGARTGWGAVIVAEAVALIAASTVHRVCITTCFLFSAALLYEVNKISGSALSTSDSRTKKQSGRA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
