SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77330 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307 | SoyBase | E_val: 7.00E-160 | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009815 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate oxidase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| KOG0143 | KOG | Iron/ascorbate family oxidoreductases | JGI | ISS | |
| PTHR10209 | Panther | FE(II)/ ASCORBATE OXIDASE SUPERFAMILY | JGI | ISS | |
| PTHR10209:SF55 | Panther | OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_I1JZ19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ19_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q84L58 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylic acid oxidase n=1 Tax=Cicer arietinum RepID=Q84L58_CICAR | SoyBase | E_val: 0 | ISS |
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Glyma04g42460 not represented in the dataset |
Glyma04g42460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g245900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42460.1 sequence type=CDS gene model=Glyma04g42460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTTCCAGTGATTGATTTTTCAAAGCTCAATGGTGAAGAAAGAGCCAAAACTATGGCACAGATTGCTAATGGATGTGAAGAGTGGGGATTTTTTCAGTTGATCAACCATGGCATTCCTGAGGAACTCCTTGAGAGGGTGAAGAAGGTTGCTGCTGAGTTCTATAAGCTGGAAAGAGAGGAGAATTTCAAGAACTCCAAATCAGTGAAGCTACTAAGCGATTTAGTCGAAAAGAAGAGCAGCGAAAAGCTGGAGCATGCGGATTGGGAGGATGTTATCACTCTCCTTGATGATAACGAATGGCCAGAAAAAACACCAGGCTTCAGGGAAACCATGGCGAAATATCGGGCCGAGCTAAAGAAATTGGCAGAGAAAGTGATGGAGGTGATGGATGAGAATCTTGGCTTAACCAAAGGGTACATCAAGAAGGCACTGAATGGTGGAGATGGAGACAATGCCTTCTTTGGCACCAAGGTGAGCCACTACCCTCCATGTCCCCATCCAGGGCTTGTGAAGGGTCTGCGAGCTCACACCGACGCAGGAGGCGTCATCCTACTCCTCCAAGATGACAAGGTTGGTGGCCTTCAGATGCTGAAAGATGGGCAATGGATTGATGTGCAGCCTTTGCCAAATGCCATTGTCATCAACACTGGTGACCAGATTGAGGTCCTGAGCAATGGTAGATACAAGAGTTGCTGGCACAGGGTTCTGGCCACACCAGATGGGAACAGAAGATCAATTGCCTCCTTCTATAACCCTTCATTCAAAGCCACCATATGTCCTGCACCACAACTTGTGGAGAAAGAAGACCAACAAGTGAATCAAACTTATCCTAAGTTTGTTTTTGGTGACTACATGTCTGTCTATGCTGAGCAGAAGTTCCTTCCCAAGGAACCAAGGTTCCAAGCTGTTAGGGCCATGTGA
>Glyma04g42460.1 sequence type=predicted peptide gene model=Glyma04g42460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVPVIDFSKLNGEERAKTMAQIANGCEEWGFFQLINHGIPEELLERVKKVAAEFYKLEREENFKNSKSVKLLSDLVEKKSSEKLEHADWEDVITLLDDNEWPEKTPGFRETMAKYRAELKKLAEKVMEVMDENLGLTKGYIKKALNGGDGDNAFFGTKVSHYPPCPHPGLVKGLRAHTDAGGVILLLQDDKVGGLQMLKDGQWIDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLATPDGNRRSIASFYNPSFKATICPAPQLVEKEDQQVNQTYPKFVFGDYMSVYAEQKFLPKEPRFQAVRAM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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