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Report for Sequence Feature Glyma04g42430

Feature Type:gene_model
Chromosome:Gm04
Start:48194775
stop:48196839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21600AT Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328 SoyBaseE_val: 5.00E-47ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009295GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoid SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009508GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_E6NU80UniRef Annotation by Michelle Graham. Most informative UniRef hit: JMS09K11.8 protein n=1 Tax=Jatropha curcas RepID=E6NU80_9ROSI SoyBaseE_val: 2.00E-49ISS
UniRef100_I1JZ16UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ16_SOYBN SoyBaseE_val: 7.00E-68ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42430 not represented in the dataset

Glyma04g42430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g245600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g42430.1   sequence type=CDS   gene model=Glyma04g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTACTTGACAAAACACTACAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGGTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGATTTGCTCCTTCAAAAGATAATACATGCGAGTGAAAAAGAGGATCCAACGACTGTCATAGAAAAACAAGAGTGGGAGAATAGCAGAGAAGAAATGGAGAGACATCTTAGAAAGCTAATAGACTTGAGCATTTCAAATTGGTTTTGA

>Glyma04g42430.1   sequence type=predicted peptide   gene model=Glyma04g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYLTKHYKNRRKGDPEFVLDFEEIYVIDSKTKSITRAKVLVTAPGGRTRDRRSDLLLQKIIHASEKEDPTTVIEKQEWENSREEMERHLRKLIDLSISNWF*







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