|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G21600 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328 | SoyBase | E_val: 5.00E-47 | ISS |
GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
GO:0006417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translation | SoyBase | N/A | ISS |
GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
UniRef100_E6NU80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JMS09K11.8 protein n=1 Tax=Jatropha curcas RepID=E6NU80_9ROSI | SoyBase | E_val: 2.00E-49 | ISS |
UniRef100_I1JZ16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ16_SOYBN | SoyBase | E_val: 7.00E-68 | ISS |
Glyma04g42430 not represented in the dataset |
Glyma04g42430 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.04g245600 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42430.1 sequence type=CDS gene model=Glyma04g42430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTACTTGACAAAACACTACAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGGTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGATTTGCTCCTTCAAAAGATAATACATGCGAGTGAAAAAGAGGATCCAACGACTGTCATAGAAAAACAAGAGTGGGAGAATAGCAGAGAAGAAATGGAGAGACATCTTAGAAAGCTAATAGACTTGAGCATTTCAAATTGGTTTTGA
>Glyma04g42430.1 sequence type=predicted peptide gene model=Glyma04g42430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVYLTKHYKNRRKGDPEFVLDFEEIYVIDSKTKSITRAKVLVTAPGGRTRDRRSDLLLQKIIHASEKEDPTTVIEKQEWENSREEMERHLRKLIDLSISNWF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||