Glyma04g42370 - SoyBase

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Report for Sequence Feature Glyma04g42370

Feature Type:	gene_model
Chromosome:	Gm04
Start:	48125723
stop:	48133783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52560	AT	Annotation by Michelle Graham. TAIR10: UDP-sugar pyrophosphorylase \| chr5:21331230-21334573 FORWARD LENGTH=614	SoyBase	E_val: 0	ISS
GO:0006011	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucose metabolic process	SoyBase	N/A	ISS
GO:0009226	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar biosynthetic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0033356	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0046398	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucuronate metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0052573	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-D-galactose metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0003983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0010491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:arabinose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
GO:0017103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:galactose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0047338	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:xylose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0047350	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronate-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0051748	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP-monosaccharide-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
KOG2388	KOG	UDP-N-acetylglucosamine pyrophosphorylase	JGI		ISS
PTHR11952	Panther	UDP- GLUCOSE PYROPHOSPHORYLASE	JGI		ISS
PTHR11952:SF2	Panther	UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1	JGI		ISS
PF01704	PFAM	UTP--glucose-1-phosphate uridylyltransferase	JGI		ISS
UniRef100_I1JZ10	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ10_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q09WE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-sugar pyrophosphorylase 1 n=1 Tax=Glycine max RepID=USP1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g42370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42370

Paralog	Evidence	Comments
Glyma06g12430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g245100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g42370

Limit To All Plant Sequences

>Glyma04g42370.1   sequence type=CDS   gene model=Glyma04g42370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAACAAAAGAATTTGCATTTATTTTCATGTTAGTTCTTCCGTCTTCTCACCACCACCTTCCACTTCCACTCTCTTCTCCATCGATCCCATTTCCATGGCTTCCTCCCTCGGCGACAACTTCAACCTTCTCTCGCCTCAACAGCAAGAGCTGGTGAAGATGCTATTGGATAACGGCCAAGAGCACCTGTTTCGCGATTGGCCTGCTCCCGGCGTTGACGACGACCACAAAAATGCGTTCTTCGACCAGCTGACTCGACTAGATTCGAGTTACCCTGGCGGTCTGGAAGCATACATCACAAATGCTAAACGGCTCTTGGCTGATTCTAAGGCTGGCAGAAACCCTTTCGATGGCTTCACACCTTCCGTTCCAACGGGTGAGACTTTGGCGTTTGGTGATGAGAACTACATCAAATTTGAGGAAGCAGGTGTACTTGAAGCTCGGAAAGCTGCGTTTGTTCTTGTTGCCGGTGGTCTTGGCGAGCGTTTAGGATACAGTGGGATTAAGCTTGCGCTTCCTGCAGAAACCACTACCAGAACATGTTTCGTACAGAATTACATTGAATCTATATTGGCTCTTCAAGAAGCCAGCTCGCAAGGTGAATCCCAGACACAGATTCCTCTTGTTATTATGACTTCTGATGATACCCATGGACGTACTTTAGAGCTATTAGAATCAAATTCTTATTTTGGTATGCAACCCACGCAAGTAACACTTTTAAAGCAGGAAAAAGTTGCATGCTTAGAAGATAATGATGCCAGGCTTGCATTGGAACCACAAAACAAGTACAAAATTCAGACAAAACCTCATGGACATGGTGATGTGCATGCGCTTCTTTATTCAAGTGGCATTCTGAAAGTATGGTATGAAGCTGGGTTGAAATGGGTTCTATTTTTTCAAGATACAAATGGGCTTCTCTTCAAGGCAATTCCATCAGCACTGGGCGTCAGTGCTGCCAAACAGTACCATGTTAACTCTCTTGCAGTACCTCGAAAAGCAAAAGAAGCTATTGGTGGAATTACCAGACTCACTCACTCTGATGGGAGGTCTATGGTGATAAATGTGGAATACAATCAGCTAGATCCTCTTCTTAGAGCAAGTGGATACCCTGACGGCGACGTAGATTGTGAGACTGGCTACTCCCCATTTCCAGGAAATATTAACCAATTGATTTTAGAACTTGGTCATTACATTGAAGAGCTCTCAAAAACAGGAGGTGCCATTCAGGAGTTTGTTAACCCAAAATATAAAGATGCCAGCAAAACTTCATTTAAGTCCTCAACTCGACTTGAATGTATGATGCAAGACTATCCAAAAACATTGCCCCCATCTGCCAGGGTTGGATTCACGGTGATGGAAACGTGGCTTGCTTATGCACCTGTGAAGAATAATGCCGAGGATGCTGCCAAGGTGCCGAAAGGAAATCCATACCATAGTGCAACTTCTGGAGAAATGGCCATCTATCGTGCAAATAGCATTATTCTCAGAAAGGCTGGTGTCCAAGTAGCAGATCCAGTAGTGCAGGTCTTCAATGGGCAAGAGGTTGAAGTTTGGCCTCGTATCACATGGAAGCCAAAATGGGGTCTGACTTTTAATCGAATCAAGAGCAAAGTCAGTGGAAATTGCTCCATTTCCCTAAGGTCAACTCTGGCCATTAAGGGTCCAAATATTTTTATTGAAAATCTGTCCGTAGATGGGGCTCTAATCATTGATGCTGTGGATGATGCAGAGGTAAATGTGAGTGGTTCAGTTCAAAACAATGGTTGGGTCCTTGAGACCGTTGACTACAAAGATGCCTCGGAGCCTGAGGTATTGAGAATCCGGGGTTTTAAATTTAACAAAATTGAGCAGCTGGAAACGAAATACTCTGAGCCTGGCAAATTTCACTTGAAGGCTTGA

Predicted protein sequences of Glyma04g42370

Limit To All Plant Sequences

>Glyma04g42370.1   sequence type=predicted peptide   gene model=Glyma04g42370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNKRICIYFHVSSSVFSPPPSTSTLFSIDPISMASSLGDNFNLLSPQQQELVKMLLDNGQEHLFRDWPAPGVDDDHKNAFFDQLTRLDSSYPGGLEAYITNAKRLLADSKAGRNPFDGFTPSVPTGETLAFGDENYIKFEEAGVLEARKAAFVLVAGGLGERLGYSGIKLALPAETTTRTCFVQNYIESILALQEASSQGESQTQIPLVIMTSDDTHGRTLELLESNSYFGMQPTQVTLLKQEKVACLEDNDARLALEPQNKYKIQTKPHGHGDVHALLYSSGILKVWYEAGLKWVLFFQDTNGLLFKAIPSALGVSAAKQYHVNSLAVPRKAKEAIGGITRLTHSDGRSMVINVEYNQLDPLLRASGYPDGDVDCETGYSPFPGNINQLILELGHYIEELSKTGGAIQEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMETWLAYAPVKNNAEDAAKVPKGNPYHSATSGEMAIYRANSIILRKAGVQVADPVVQVFNGQEVEVWPRITWKPKWGLTFNRIKSKVSGNCSISLRSTLAIKGPNIFIENLSVDGALIIDAVDDAEVNVSGSVQNNGWVLETVDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA*

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