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Report for Sequence Feature Glyma04g42350

Feature Type:gene_model
Chromosome:Gm04
Start:48112772
stop:48115484
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g42350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08455AT Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein | chr4:5375891-5376922 FORWARD LENGTH=243 SoyBaseE_val: 2.00E-89ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR26379Panther FAMILY NOT NAMED JGI ISS
PTHR26379:SF191Panther JGI ISS
PF00651PFAM BTB/POZ domain JGI ISS
UniRef100_B9S2S7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2S7_RICCO SoyBaseE_val: 1.00E-88ISS
UniRef100_I1JZ08UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ08_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g42350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42350
ParalogEvidenceComments
Glyma06g12440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g244900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g42350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g42350
>Glyma04g42350.1   sequence type=CDS   gene model=Glyma04g42350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCGCGGCGGTGCACGGCGGCGTATTCGGCAGTGGCGCAGATGGGCAGCAACACGAGCGAGAGCGACGCGGAGGAGCTGGTGATGCGGTGCCTCTCGTGCGAGGAGGAGTACGACGTGGACGACTCGGGAACCTGCAGGGAGTGCTACCAGGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCACGAGATCGAGGAGCTCAAATCCAAAGTCTCCTTCCTCACTCTCCCCTCTCCCAATCTTAACGCTTCCACCGCCGATGTCGTCCTCGTTCCCGTCGACGACTCCGACGACGCTCCCATTCCCGCTCACAAGCATCTTCTGGTTAGTCGCTCTCCTGTTTTCAGAGCAATGCTCAAGAATGATATGACAGAAAGGCGGAGTGGCACCATCAAGATTTCTGACGTATCATATGATACCCTTCATGCTTTTGTTAATTATTTATACACTGCTGAAGCGTCCCTTGATAATGAATTGGCCTGTAACCTGTTGGTTTTAGGAGAAAAGTATCAGGTGAAGCATCTCAAGACATATTGTGAAAAGTATTTGATCGCCAAAATGAATTGGGATAAAGCTATTTCTAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACAAAGTGTGTCCTTGGCAGTGATCTTGGACCACATGGACTCGCTCACTCAAAATGAATGTTATGCGGAGCTGGTGGACACTAATCCTCGTCTTGTTGTGGAAATATATGAAACATACATTGGCAGGCTATTAAATACTGCAGGCGCATTTTAG
Predicted protein sequences of Glyma04g42350
>Glyma04g42350.1   sequence type=predicted peptide   gene model=Glyma04g42350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPRRCTAAYSAVAQMGSNTSESDAEELVMRCLSCEEEYDVDDSGTCRECYQEANEAEEELRHEIEELKSKVSFLTLPSPNLNASTADVVLVPVDDSDDAPIPAHKHLLVSRSPVFRAMLKNDMTERRSGTIKISDVSYDTLHAFVNYLYTAEASLDNELACNLLVLGEKYQVKHLKTYCEKYLIAKMNWDKAISNYAFAYQYNCKQLQSVSLAVILDHMDSLTQNECYAELVDTNPRLVVEIYETYIGRLLNTAGAF*






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