SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21270 | AT | Annotation by Michelle Graham. TAIR10: wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligosaccharide metabolic process | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009992 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular water homeostasis | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF444 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF07645 | PFAM | Calcium-binding EGF domain | JGI | ISS | |
| UniRef100_B9S2R0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2R0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A4F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A4F9 related cluster n=1 Tax=unknown RepID=UPI000233A4F9 | SoyBase | E_val: 0 | ISS |
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Glyma04g42290 not represented in the dataset |
Glyma04g42290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g244100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42290.1 sequence type=CDS gene model=Glyma04g42290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTTATCACGGGATGATACAAAAGTTGTGCTAGTTGCATGGTTTCTATTAATGATCTCAGCAATGTCGCAAACAATTCGTCCTAGCTGCCAAAATAAATGTGGAAGTGTGAACATTCCATATCCTTTTGGTACAACTGAGAACTGCTGCTTGAACAGAAACTTTTATGTTGCTTGTAACACAAGTCACAACCCTCCCAAACCATTTCTGTGGAATGTGACAAAAAATATTGAGATTTTAGAGGTGTCGTTGAATGGCCATTTGAGGATAAAATCCCCTGTAGCTTATGTTTGCTATGATGAAAAGGGTGTGCTAGTGGATTCCGGAAATTCATTCATGACTTTGCAAGCATTCCACTTCTCATACTCTCAGAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAACCATCAATGCAACAATTGGGAAAAACTACTCAGCTGGAGGGTGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAGCCAATGGATCCTGGTTTGGCATTGGTTTCTGCCAAACCTCTATCCCAAAAAACATTTTGGCATATCAAGCTCGTGTCCTGAGATCAAATTTGATGCATAGTGATATGAATATTCCTTGTGCCTACTCTCTTTTGGTTGAAGAGGACTCTTTCAAGTTCTCCACGGATGACTTCATCAAACTTCAGAAGACAAAAACAGCTACCACAGTGCTTGATTGGGCTGTTGGAAATCAGACATGTCAAGAAGCTAAGAAGAATTTAACTAGTTATGCCTGCCAAGCAAATAGTGTATGTATTGATTCTGACAATGGACCAGGGTACCTTTGCAGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCAAGATATTGATGAGTGCGCCAATCCGAGTCTAAATGACTGTTCAGATATTTGCCTTAACCTACCTGGGAGCTATAATTGCTCTTGTCCCAAGAGCAAGAGTTATGAGGGAGATGGCAGAAAAGGAGGTAGTGGCTGTGTCTCGAATCTACCACATGTGGTTAATCAGATTGTGATAGGCACTGGCATAGGCCTTATGCTGTTGTTAATTGGTAGTGGCTGGCTATTCCATGTGTTCCGTAAAAGAAAAATGGTGAGACTCACAGCAAGATATTTTAAGAGAAATGGTGGCTTAATGTTGCAGCAGCAAATTGCGAACATGGAAGGATCATCTGAGAGAGCCAAAATTTTCACTGCAACTGAGCTAAAGAAAGCCTCCGAAAACTTTCATGAGAGCAGAATCATTGGCAGAGGAGGATACGGTACGGTTTATAGGGGAATACTTCCAAATGACAAAGTTGTTGCTATCAAGAAATCAAAACTAGTAGACCACAGCCAAATTGAACAATTCATCAATGAAGTGGTTGTACTGTCCCAAATCAACCACAGAAATGTTGTCAAACTCCTAGGTTGCTGTCTAGAGACAGAAATGCCACTACTGGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATTCACAACAAAAACACCACACTTCCCTGGGTAACACGTCTAAGAATAGCAGCAGAAACGGCTGGTGTGCTTGCATACTTGCATTCTGCTGCCTCCATACCAGTCATCCATAGGGACTTTAAGTCAACTAACATACTGTTGGATGACAAATACACAGCTAAGGTTTCTGACTTTGGAACCTCGAGATTGGTTCCACGTGACAAGTGTCAATTAACAACATTGGTTCAGGGAACTCTTGGCTACCTTGACCCTGAGTACTTTCAGACCAGCCAACTAACTGAGAAAAGCGATGTGTATAGCTTCGGTGTCGTGCTTGCGGAGTTGCTAACTGGAAGAAGGGCACTTTCTTTTGACATGCCAGAGGAAGAGAGAAACTTAGCCTTGTATTTCCTTTCAGCTGTGAAGGATGATTGCTTGTTCCAAATTGTAGAGGATTGTGTGAGTGAGGGAAATAGTGAGCAGGTGAAGGAAGTTGCTAACATTGCTCAATGGTGCTTGAGGCTTAGAGGTGAGGAAAGACCTACCATGAAGGAAGTGGCAATGGAATTGGATAGTCTTAGAATGATGACAACAACAACTACATGGATTAATGCCGCATCAAATTCAACAGAATATGTGATTGGTGAAAGATCAGGTCGAACAGAAACAACAGACTATGCTAATTGTCATTATACTACATGTGCTGGGCATGAGGATGACACCATTTGCAACGATGTGATGTCACCGTTATGGGATGGTAGATGA
>Glyma04g42290.1 sequence type=predicted peptide gene model=Glyma04g42290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILSRDDTKVVLVAWFLLMISAMSQTIRPSCQNKCGSVNIPYPFGTTENCCLNRNFYVACNTSHNPPKPFLWNVTKNIEILEVSLNGHLRIKSPVAYVCYDEKGVLVDSGNSFMTLQAFHFSYSQNKFIGIGCDTLSTINATIGKNYSAGGCFSLCSSVESSANGSWFGIGFCQTSIPKNILAYQARVLRSNLMHSDMNIPCAYSLLVEEDSFKFSTDDFIKLQKTKTATTVLDWAVGNQTCQEAKKNLTSYACQANSVCIDSDNGPGYLCRCLEGYVGNAYLHGGCQDIDECANPSLNDCSDICLNLPGSYNCSCPKSKSYEGDGRKGGSGCVSNLPHVVNQIVIGTGIGLMLLLIGSGWLFHVFRKRKMVRLTARYFKRNGGLMLQQQIANMEGSSERAKIFTATELKKASENFHESRIIGRGGYGTVYRGILPNDKVVAIKKSKLVDHSQIEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNKNTTLPWVTRLRIAAETAGVLAYLHSAASIPVIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDMPEEERNLALYFLSAVKDDCLFQIVEDCVSEGNSEQVKEVANIAQWCLRLRGEERPTMKEVAMELDSLRMMTTTTTWINAASNSTEYVIGERSGRTETTDYANCHYTTCAGHEDDTICNDVMSPLWDGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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