Report for Sequence Feature Glyma04g42260
Feature Type: gene_model
Chromosome: Gm04
Start: 48030826
stop: 48033988
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g42260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G44000 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:16708201-16709521 REVERSE LENGTH=260
SoyBase E_val: 1.00E-92 ISS
GO:0009658 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast organization
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JZ01 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ01_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LNZ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F9C16.20 n=1 Tax=Arabidopsis thaliana RepID=Q9LNZ8_ARATH
SoyBase E_val: 2.00E-84 ISS
Expression Patterns of Glyma04g42260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g42260
Paralog Evidence Comments
Glyma06g12550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g42260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g243800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g42260
Coding sequences of Glyma04g42260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g42260.1 sequence type=CDS gene model=Glyma04g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATGTCATTGTGCTTCTTACAATGCCTTTACATTTTCACCAACCAGAGAGTTCATCACCACCACCACCACCAACCACATCATGTCAAAAACATCATCCACTACTACTAGATGCAGACCCTTTCTCTTGTCCATCACCAATGCCACACCATCCTACAACACCCTTGTTTCTGAGGCTGTTAGGCTTTTGGTTCCTTCAGCAAGATTTGAAGCTTCAAAACTGAAGGTTGTTCTATTGGAAGATCAGATAAACAAACACGCTAGTATTATTCCAAGAACCTACATTCTATCCCATTGTGACTTTACAGCTAATCTGACTTTAGCGGTGTCCAATGTGATAAACCTAGAGCAGTTGAGAGGGTGGTATGAGAAGGATGATGTTGTAGCTGAATGGAAGAAAGTGCAAAATGATATGTGCCTACATGTTCATTGCTTTGTCAGTGGTCCCAATTCCTTCCTGGATCTGGCTGCTGAATTGAGATATCACATATTCTCCAAGGAGATGCCTTTGGTACTCAAAGCAATTCATTGTGGAGACTCTGCACTTTTCCGTGAGCATCCTGAATTGCTGGATTCTATAGTTAGAGTATATTTTCATTCTTGCTCAGAAAAATACAACAGGATGGAATGTTGGGGACCTCTCAAGGATGCAATGGAGGGAAAACAAGCAGATCAGTTCCAAGGGTCAATAAGAAGAGATAGTCCTGAAAAGTTGCGGAGCCCAAAGTCCATCTTCCAAGCTCTTTTTGCTTTTCTTCTTTGA
Predicted protein sequences of Glyma04g42260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g42260.1 sequence type=predicted peptide gene model=Glyma04g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MACHCASYNAFTFSPTREFITTTTTNHIMSKTSSTTTRCRPFLLSITNATPSYNTLVSEAVRLLVPSARFEASKLKVVLLEDQINKHASIIPRTYILSHCDFTANLTLAVSNVINLEQLRGWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPLVLKAIHCGDSALFREHPELLDSIVRVYFHSCSEKYNRMECWGPLKDAMEGKQADQFQGSIRRDSPEKLRSPKSIFQALFAFLL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
