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Report for Sequence Feature Glyma04g42246

Feature Type:gene_model
Chromosome:Gm04
Start:48019840
stop:48027339
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g42246
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21380AT Annotation by Michelle Graham. TAIR10: Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506 SoyBaseE_val: 0ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG1087 KOG Cytosolic sorting protein GGA2/TOM1 JGI ISS
PTHR13856Panther VHS DOMAIN CONTAINING PROTEIN FAMILY JGI ISS
PTHR13856:SF3Panther TARGET OF MYB1 JGI ISS
PF00790PFAM VHS domain JGI ISS
PF03127PFAM GAT domain JGI ISS
UniRef100_B9S2Q1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JZ00UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZ00_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g42246
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42246 not represented in the dataset
Glyma04g42246 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42246
ParalogEvidenceComments
Glyma06g12570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42246 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g243600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g42246
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g42246
>Glyma04g42246.1   sequence type=CDS   gene model=Glyma04g42246   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAACAACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCTGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGACCCTGGGCAAGCAAAGGATGCTTTGAAGATACTCAAGAAGCGTTTGGCCAGTAAAAATCCAAAAATACAGCTTCTGGCTCTTTTTGTATTGGAGACTCTTAGTAAGAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCGGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTGAAGTCTGCTGGAGTTGAATTTCCACCACGAGATGAGAATAGTGTACCATTCTTCACTCCCGCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAGGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGTGCCAGAGAAGCAGAAACTTCAGTTCTACCACTTGTAAATGTAAACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAGAAGCCGGTCTACTCTGGCACCGGCATGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTCCTGAAAACTCAGAACCCACTTCATTTACAGCTCCCCTTCATTCTAGCCCTAATCCAACCTCGTCAACTATTCCATCTCTGTCTTCCTCTCATCCTCATGCTGTGAGTACTACCTCATCACCAATTTTTAGCAGCGAGCCTGTGTATGATGAACAACCATCTTCTGAGGACAAATCTTCGGAGTGTCTGCCTGCAGCTCCCTGGGATGCTCAATCTCCTGGCATCATTCCGCCCCCACCTTCAAAGTATAATCAAAGACAACAGTTTTTTGAGCAACAAGGTGTATCTCATTCAAGTAGTGGATCCAGTTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAGGATCTTGTTGATTTTGCCAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA
Predicted protein sequences of Glyma04g42246
>Glyma04g42246.1   sequence type=predicted peptide   gene model=Glyma04g42246   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLASKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRDENSVPFFTPAQTQPIIHSAAEYDDATIQASLQSDASDLSLLEIQNAQGLADVLMEMLSALSPKDREGVKEEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLALNDSLQRVLCRHDDIVKGTADSGAREAETSVLPLVNVNHEDDESEDDFAQLAHRSSRDTQAQNQKPAYDKAEPGRINPLIPPPPASKKPVYSGTGMVDYLSGDTYKTEGSPENSEPTSFTAPLHSSPNPTSSTIPSLSSSHPHAVSTTSSPIFSSEPVYDEQPSSEDKSSECLPAAPWDAQSPGIIPPPPSKYNQRQQFFEQQGVSHSSSGSSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY*






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