SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21410 | AT | Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360 | SoyBase | E_val: 5.00E-180 | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0031146 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051781 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell division | SoyBase | N/A | ISS |
| GO:0071365 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF104 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_E4MWH2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-14-K17 n=1 Tax=Eutrema halophilum RepID=E4MWH2_THEHA | SoyBase | E_val: 9.00E-179 | ISS |
| UniRef100_I1JYY9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JYY9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g42160 not represented in the dataset |
Glyma04g42160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g12640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g242700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g42160.3 sequence type=CDS gene model=Glyma04g42160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATTCTGTCCCTTGTGGATGATCAGACGGTGATCACAGCTTCTGGAGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGACTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAGCATGAATAACTTGGTCCTATCTCTTGTTCCGAAATTCGTAAAACTGCAAACTCTAATCCTCCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTCGAGACTATTGCAAAATGCTGTCATGAACTGCAGATTCTGGATCTCAGCAAAAGTTTCAAGCTAACTGATCATTCACTCTATGAACTTGCCCTTGGTTGTCGTGATCTTACAAAACTCAACATCAGTGGTTGTTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGGTGTGTTAGAGCTGCATCTGATACTGCATTACAGGCTATTGGACAATACTGCAATCAGCTACAATCTTTGAACCTTGGATGGTGCGATAATGTTGGCGATGTTGGAGTAACTACTTTAGCATACGGGTGTCCTGATCTTAGGATAGTTGATTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCAACTAGATGCCCCCATCTGAGGTCCCTAGGACTGTACTACTGCAAGAACATCACAGATAGGGCAATGTATTCCTTGGCACACAGCAAGGTGAACAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGATGAAGATGGGTTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCTGTTTGTGACTCATTCCCTTCCCTTCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACTTCAGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGCATTCACCACTTTCCCTCATCCTGCTCATTAA
>Glyma04g42160.3 sequence type=predicted peptide gene model=Glyma04g42160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKSMNNLVLSLVPKFVKLQTLILRQDKPQLEDNAVETIAKCCHELQILDLSKSFKLTDHSLYELALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALATRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTTFPHPAH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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