Glyma04g42040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g42040): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g42040): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g42040

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47811168
stop:	47816442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g42040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21460	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr1:7512030-7513281 REVERSE LENGTH=247	SoyBase	E_val: 2.00E-126	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_D7KK13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin MtN3 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KK13_ARALL	SoyBase	E_val: 2.00E-124	ISS
UniRef100_I1JYX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYX9_SOYBN	SoyBase	E_val: 4.00E-176	ISS

Proteins Associated with Glyma04g42040

Locus	Gene Symbol	Protein Name
	SWEET8	sucrose transporter gene 8
	SWEET8	sucrose effluxer gene 8

Expression Patterns of Glyma04g42040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g42040 not represented in the dataset	Glyma04g42040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g42040

Paralog	Evidence	Comments
Glyma06g12740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g42040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g241400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g42040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g42040

Limit To All Plant Sequences

>Glyma04g42040.3   sequence type=transcript   gene model=Glyma04g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTGCATTGGAAACTTATCAAGATGTGTAATATCAACAAATCAACCATCCTCCGCCCTTTTAGCGGTACCCTCGTTCCTTAATGGCAGAAGCTGCACTGTTGCACTGCATACATGTCTCGTGTTGATGTCATGTGGAACTACTACTATATTTGCCCTTTCCCTCATCCCGTGAGTTATGTACCGAGTGTGACAATGATATATATAGCATAAGCATCTGCATTATTTCGGGTTGGCACAAATGAGACACATCACAAAGACCGTATAATACATGATTATGATCGTGGTTATGAAGGAAAATAAGTTCTCAACATCAAGTTCCAAGGATAAGATCAAATACAGTACTATACTGTATTTAACCTTGCACTTGTTTCCTTTTCCTATATATACCAACTAACTTGTACTCTCCTATCATCGTAGCTTGTTACCATTTCTAAAGAAACAGGCATTATTTGAGCACTTTGGGACTCTCAACTCTCAGGGATACCTTCTCCATCCGCTACTTCTGCAGATTAGCTAGAAGAAAGAAATAAAAGATAACACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTATTGGCACCAAGGAAGGAAAAGGCTAAAATTCTTGGTCTCTTCACCTTCGTGCTCTCGGTGTTCTCTGCTGTTGTTTTCGTGTCACTCTTTGCCCTTCATGGCAATTCCAGAAAGCTCTTCTGTGGCTTCGCTGCAGCCATATTTTCCATTATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTGATCAAAACCAAGAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATATTTCATATACCGAGACAATAAAGGCGTTACAGGGAAACAAGCCCCAACAGAGGAGGAATCCATGGAGATCGGGGATGTAAAGCCCCAACAAGGGAAGCAATCCAATGCAAATGGAATTCAAGGATGATATGTCAAATCACAACACATGCCAAAGACAATAGTCATGTTTGTCATTTTTCAGCTACATAATCTGCAACTGAGAGCAAGAACCTCTATGATTTGATCTGCTCTTTAAATGGCTGTAATTTACTTCTTGCTAAGACACTGGCACCTTTAATTAGCCGATAATATTGCATGGAAACAAGCATGTGTTGTGTGAGTTTTTATTAGCTCCTTCCCCTGGTCTCAGGGATTTTATGTTGGTGGCTTTTTCCTAGTGTACAACCTACCAAATAAAAGTGCAAATTCGGAATTGAAATTTGCAATTAAAATTTTTATGCCAATGTGAAGAAGCTAAAAGGAAATACGATTTGCTGAGATGACCATAATTTTGAATTTCTGAGGTGTTGATCCTGATAACAACACAGGTTACTAACATAAAATTGAGAATGATTAAGAATATGTGATCCTATGACACCTTTTTCCTCTTTATGCGGATGTTTTGAGTGAGGGGTTAATCAGTTGATGTGATCTTTAACAGTCATACAAAGTTAGCCATATCAATTAGTTGAAGTAATGTTGCTGTTCAGCATGAAAGAATCAACCCAAATTGCATTCCTGAACAAGGTGGAAAGTGGAAATCATGGGTAGGATTAGTGGGACGATCCAGGTAACATGCTTGTATTTGTCCCAACTCTATCATCAATCAAGCTTTCTTGTTCTGCTTTAAAGTCCAATGGCAATATATATTGCTCCTCTTCATTGTTTTAATGGGAGCACTTGACGTTCTTCCCTATGCTAACAATACGTACTACTGAAGATTTATGTTCTGTTTCTTACCACCTTGAGAATGGTGTTAGTTAAGCTAACACCTTGGGAATGGTCTCCTAGTTGGTGGTCTGGGGGAGTTCACTCCAAGGAGTTCCATACTAAAATAAGTGGAAAGTCAGAGCTATTTGTTGGTTAAGGAAGAATTTGTACCTGATATGTGT

Coding sequences of Glyma04g42040

Limit To All Plant Sequences

>Glyma04g42040.2   sequence type=CDS   gene model=Glyma04g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTGCACATTTTTTGTTTGGCATCTTTGGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTATTGGCACCAAGGAAGGAAAAGGCTAAAATTCTTGGTCTCTTCACCTTCGTGCTCTCGGTGTTCTCTGCTGTTGTTTTCGTGTCACTCTTTGCCCTTCATGGCAATTCCAGAAAGCTCTTCTGTGGCTTCGCTGCAGCCATATTTTCCATTATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTGATCAAAACCAAGAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATATTTCATATACCGAGACAATAAAGGCGTTACAGGGAAACAAGCCCCAACAGAGGAGGAATCCATGGAGATCGGGGATGTAAAGCCCCAACAAGGGAAGCAATCCAATGCAAATGGAATTCAAGGATGA

>Glyma04g42040.3   sequence type=CDS   gene model=Glyma04g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTGCACATTTTTTGTTTGGCATCTTTGGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTATTGGCACCAAGGAAGGAAAAGGCTAAAATTCTTGGTCTCTTCACCTTCGTGCTCTCGGTGTTCTCTGCTGTTGTTTTCGTGTCACTCTTTGCCCTTCATGGCAATTCCAGAAAGCTCTTCTGTGGCTTCGCTGCAGCCATATTTTCCATTATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTGATCAAAACCAAGAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATATTTCATATACCGAGACAATAAAGGCGTTACAGGGAAACAAGCCCCAACAGAGGAGGAATCCATGGAGATCGGGGATGTAAAGCCCCAACAAGGGAAGCAATCCAATGCAAATGGAATTCAAGGATGA

Predicted protein sequences of Glyma04g42040

Limit To All Plant Sequences

>Glyma04g42040.2   sequence type=predicted peptide   gene model=Glyma04g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVAHFLFGIFGNASALFLFLAPVITFKRIIKNRSTEKFSGIPYVMTLLNCLLSAWYGLPFVSPHNILVSTVNGTGSLIEIIYVLIFIVLAPRKEKAKILGLFTFVLSVFSAVVFVSLFALHGNSRKLFCGFAAAIFSIIMYGSPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFIFGLLGRDPFVAVPNGVGSALGTTQLILYFIYRDNKGVTGKQAPTEEESMEIGDVKPQQGKQSNANGIQG*

>Glyma04g42040.3   sequence type=predicted peptide   gene model=Glyma04g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVAHFLFGIFGNASALFLFLAPVITFKRIIKNRSTEKFSGIPYVMTLLNCLLSAWYGLPFVSPHNILVSTVNGTGSLIEIIYVLIFIVLAPRKEKAKILGLFTFVLSVFSAVVFVSLFALHGNSRKLFCGFAAAIFSIIMYGSPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFIFGLLGRDPFVAVPNGVGSALGTTQLILYFIYRDNKGVTGKQAPTEEESMEIGDVKPQQGKQSNANGIQG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain