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Report for Sequence Feature Glyma04g41750

Feature Type:gene_model
Chromosome:Gm04
Start:47620591
stop:47624110
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g41750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53300AT Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148 SoyBaseE_val: 2.00E-106ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
GO:0031625GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24068Panther FAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_J3UE53UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme n=1 Tax=Lycoris longituba RepID=J3UE53_9ASPA SoyBaseE_val: 9.00E-105ISS
UniRef100_UPI0002339A33UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339A33 related cluster n=1 Tax=unknown RepID=UPI0002339A33 SoyBaseE_val: 1.00E-105ISS

Expression Patterns of Glyma04g41750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g41750 not represented in the dataset
Glyma04g41750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41750
ParalogEvidenceComments
Glyma06g13020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g238800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g41750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g41750
>Glyma04g41750.2   sequence type=CDS   gene model=Glyma04g41750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGAAGCGGATCTTGAAGGAACTCAAGGATCTCCAAAAGGATCCTCCTACCTCATGCAGCGCCGGTCCTGTTGCTGAAGACATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTCACTATTCATTTCCCTCCAGATTATCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTATTTCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCGCTAACTATTTCAAAGGTGTTGCTCTCAATTTGTTCCCTGTTGACGGACCCTAATCCTGACGATCCTTTGGTCCCTGAAATTGCCCACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCCAGAAGCTGGACCCAGAAATATGCCATGGGTTAA
Predicted protein sequences of Glyma04g41750
>Glyma04g41750.2   sequence type=predicted peptide   gene model=Glyma04g41750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG*






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