Glyma04g41730 - SoyBase

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Report for Sequence Feature Glyma04g41730

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47581912
stop:	47587226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27940	AT	Annotation by Michelle Graham. TAIR10: manganese tracking factor for mitochondrial SOD2 \| chr4:13904745-13907036 FORWARD LENGTH=413	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:1901562	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to paraquat	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0016530	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallochaperone activity	SoyBase	N/A	ISS
KOG0761	KOG	Mitochondrial carrier protein CGI-69	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7J698	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding mitochondrial carrier protein SCaMC-2 n=1 Tax=Medicago truncatula RepID=G7J698_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYV4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41730

Paralog	Evidence	Comments
Glyma06g13050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g238600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41730

Limit To All Plant Sequences

>Glyma04g41730.2   sequence type=transcript   gene model=Glyma04g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAGAAGGCAAAAGACGCTTAGGCATCCATCTCGATCGCCAAAGGGATGCAAAGCCATGTCCATATTTGTTAACACCAAAATGAAAGAGAGAGACTGAAAAGAAAATGCTATAGTTTGATGCTAAAATAAAATTCCGATTCCGCCGCTAACAAACCCTAATAAAGCTTAATTAGCTTGGACTGTTAACTTGACTCAGCGCACCACAACCCCAGTGTGGTTCCCGGAACCGGAAGGTACTGGCTTGGCTAGGTTAGTTGCAGCAGCAACACCACACAACAGCCAAGGTAGGGCCAGTTTGAATATTTGCTCAACACAAGCGTTTACTAGGGTTTTTTCCGCTGAAAAGTACGTGTCCCATTCTTGTCAACAAACGTGGCGCGCTTCTTAACATAAGCACTTGCAATGGCGGATTCAGAGCGAATCCAAAATTCGTGGATGGCTTCGGATCAAACTGCAATTGAAATGAGCGGCGAGGGCACAGGTTCCAGGGAATGCTCTTCTCTCCCTCCGCCGCCGCAAAAACCATTCAATTCTGATCAATTGGGAATCGGAGAACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCATATTCTCATCCACTCAGTAATATGACCAGTAGAATGGCTTGTTTTGGGCCAAATATGATATTTGCTGATTTAAAATGTTCTCCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCCGAGTGTTTTCGCTACAAAGGAACACTAGATGTTATCTACAAAATTATAAAACAGGAGGGAATTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATATACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTCACAGCTAAAAAGGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGCACTACTTGCTACCCTATTGAACTTGCTAAAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTTTCAAATGTCAAGAGCACAAACACTCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCCTTCTCTGCTATTTGTTGGTCGACACTTGAACCGACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACCTTAGCAGCTGGAGCCACATGTCCGCTAGATGTTGTAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGCTTGAAAGGATTGTTTACAGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCTGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATCAGTACACATAATCATGATTTTCTGCACACTTTTTTTGCTGCCAAAGCAGTTATTCAGAACCTCTGGAGATTGCAGAACATTTTTTTTTGGAATGGGAATCATTCCAATCCATCCTGACCATAAACTAACATAATTGAACAGGAAAATGACCGGCATAGGACACACTTAGGTTTTTTGAGCTGTGCATTGTTTTTAATTTTTTTTGCTGCTTTTGACAAGCAGAAATTTTGTTACACTTGGGGTTCTCCCCTGAACTATAATCGATTAAATAAAATATGAAAAATTGAGTTTTTTTCCTCCCAAAAACTGCTACAGACAATGTCACTTACGCTTG

Coding sequences of Glyma04g41730

Limit To All Plant Sequences

>Glyma04g41730.1   sequence type=CDS   gene model=Glyma04g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCAGAGCGAATCCAAAATTCGTGGATGGCTTCGGATCAAACTGCAATTGAAATGAGCGGCGAGGGCACAGGTTCCAGGGAATGCTCTTCTCTCCCTCCGCCGCCGCAAAAACCATTCAATTCTGATCAATTGGGAATCGGAGAACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCATATTCTCATCCACTCAGTAATATGACCAGTAGAATGGCTTGTTTTGGGCCAAATATGATATTTGCTGATTTAAAATGTTCTCCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCCGAGTGTTTTCGCTACAAAGGAACACTAGATGTTATCTACAAAATTATAAAACAGGAGGGAATTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATATACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTCACAGCTAAAAAGGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGCACTACTTGCTACCCTATTGAACTTGCTAAAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTTTCAAATGTCAAGAGCACAAACACTCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCCTTCTCTGCTATTTGTTGGTCGACACTTGAACCGACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACCTTAGCAGCTGGAGCCACATGTCCGCTAGATGTTGTAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGCTTGAAAGGATTGTTTACAGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCTGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATCAGTACACATAA

>Glyma04g41730.2   sequence type=CDS   gene model=Glyma04g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCAGAGCGAATCCAAAATTCGTGGATGGCTTCGGATCAAACTGCAATTGAAATGAGCGGCGAGGGCACAGGTTCCAGGGAATGCTCTTCTCTCCCTCCGCCGCCGCAAAAACCATTCAATTCTGATCAATTGGGAATCGGAGAACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCATATTCTCATCCACTCAGTAATATGACCAGTAGAATGGCTTGTTTTGGGCCAAATATGATATTTGCTGATTTAAAATGTTCTCCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCCGAGTGTTTTCGCTACAAAGGAACACTAGATGTTATCTACAAAATTATAAAACAGGAGGGAATTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATATACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTCACAGCTAAAAAGGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGCACTACTTGCTACCCTATTGAACTTGCTAAAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTTTCAAATGTCAAGAGCACAAACACTCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCCTTCTCTGCTATTTGTTGGTCGACACTTGAACCGACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACCTTAGCAGCTGGAGCCACATGTCCGCTAGATGTTGTAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGCTTGAAAGGATTGTTTACAGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCTGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATCAGTACACATAA

Predicted protein sequences of Glyma04g41730

Limit To All Plant Sequences

>Glyma04g41730.1   sequence type=predicted peptide   gene model=Glyma04g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSERIQNSWMASDQTAIEMSGEGTGSRECSSLPPPPQKPFNSDQLGIGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNMTSRMACFGPNMIFADLKCSPSCHRAGFQGTVSICPPECFRYKGTLDVIYKIIKQEGISRLWRGTNAGLALAVPTVGIYLPCYDILRNWLEEFTAKKAPTTTTYVPLVAGSLARSLACTTCYPIELAKTRMQAFKETQIGKKPPGVIQTLLGVVSNVKSTNTPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLGLIGGDDANALSVLGANFGAGFVAGTLAAGATCPLDVVKTRRQIERDPVRALKMTTRQTLMEVWRDGGLKGLFTGVGPRVGRAGPSVGIVISFYEVVKFVLHHQYT*

>Glyma04g41730.2   sequence type=predicted peptide   gene model=Glyma04g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSERIQNSWMASDQTAIEMSGEGTGSRECSSLPPPPQKPFNSDQLGIGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNMTSRMACFGPNMIFADLKCSPSCHRAGFQGTVSICPPECFRYKGTLDVIYKIIKQEGISRLWRGTNAGLALAVPTVGIYLPCYDILRNWLEEFTAKKAPTTTTYVPLVAGSLARSLACTTCYPIELAKTRMQAFKETQIGKKPPGVIQTLLGVVSNVKSTNTPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLGLIGGDDANALSVLGANFGAGFVAGTLAAGATCPLDVVKTRRQIERDPVRALKMTTRQTLMEVWRDGGLKGLFTGVGPRVGRAGPSVGIVISFYEVVKFVLHHQYT*

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