Glyma04g41710 - SoyBase

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Report for Sequence Feature Glyma04g41710

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47560871
stop:	47565667
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53210	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:21586606-21588941 REVERSE LENGTH=364	SoyBase	E_val: 2.00E-111	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010374	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex development	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4029	KOG	Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1	JGI		ISS
PTHR11534	Panther	MYOGENIC FACTOR	JGI		ISS
PTHR11534:SF7	Panther	MYOGENIC FACTOR MYF-5	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9RIM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIM0_RICCO	SoyBase	E_val: 4.00E-165	ISS
UniRef100_UPI000233A092	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A092 related cluster n=1 Tax=unknown RepID=UPI000233A092	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41710

Paralog	Evidence	Comments
Glyma06g13081	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g238400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g41710

Limit To All Plant Sequences

>Glyma04g41710.1   sequence type=CDS   gene model=Glyma04g41710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATAGCTTATGCGATATTTTCGATGACAAAGAGTTTGGGAGCGAACACTTTGGTGGGGACGATCTCTTTGCCATTTTGGAGAGCCTAGAATCGGACTTCACCGACTTCCCTCCTCCCATTAACGAAGAAGCTGTTGTTGCTGCTGTCTCCAAAGACAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCGAGTGCTCCACTTGATTCCGAAACTGAGCTTGAAACCTCTTCCAAAACCAAGAGGCAGAAGCTTACTCCTACTACTCCAGAGGAAGCTAACCCAGATGGACAACAAAAGATGTCTCATATTACTGTTGAACGCAACAGGAGAAAGCAAATGAATGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTCCAAGCCCTAGAGGCCAAGAAGCAAAGAAAAGTCTACAGCGAAGTCCTGAGCCCTAGGCTCGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAGCCCCCTTTAAGCCCGAGACTGAACTTGCCAATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGGCGCAGCAAGGCTACAACAACATCATTTCACCAACCATGTCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGACAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTATGAAGATTATAACGGCACTTGAAGATCTTGCGCTCGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA

Predicted protein sequences of Glyma04g41710

Limit To All Plant Sequences

>Glyma04g41710.1   sequence type=predicted peptide   gene model=Glyma04g41710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDSLCDIFDDKEFGSEHFGGDDLFAILESLESDFTDFPPPINEEAVVAAVSKDNNEDVSRLVSQKSTSSSAPLDSETELETSSKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQAQQGYNNIISPTMSNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQAMKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC*

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