Report for Sequence Feature Glyma04g41630
Feature Type: gene_model
Chromosome: Gm04
Start: 47482437
stop: 47488634
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g41630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G53150 AT
Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726
SoyBase E_val: 0 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0031072 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding
SoyBase N/A ISS
GO:0051082 GO-mf
Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding
SoyBase N/A ISS
PTHR25040 Panther
FAMILY NOT NAMED
JGI ISS
PTHR25040:SF41 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00226 PFAM
DnaJ domain
JGI ISS
PF11926 PFAM
Domain of unknown function (DUF3444)
JGI ISS
UniRef100_G7J6T0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Curved DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7J6T0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JYU3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JYU3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g41630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g41630
Paralog Evidence Comments
Glyma06g13181 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g41630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g237600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g41630
Coding sequences of Glyma04g41630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g41630.1 sequence type=CDS gene model=Glyma04g41630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAGTTTGCTCTCAAGGCTCAAAATCTGTATCCTGAGTTGGAGGATATTACCCAGCTTTTGACAACAATTGATATTTATACATCCGCTGAGAATAAAGTAAGCGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAGGAGACTGTCAGAAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTGGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGATTCCAACATAATACTCCCAACCATGTTGGATCTCAACCAGAAGCACCCAGTTCAAATGGTTATTATAATCTAAAGAAGAATGTTAATTCAAATGTCAGGACTGGAAATAATAGTGGTCGGGCACCTTCAGCTCCGGTTAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAGGTGCAGGACACATTATGAATATCTCAGGGTTTATTTGAATCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTCGCTGTAGAGAGGGGTCCACCACCAAATGTTTTTAAGCCACCAAATTGGTCTTCTCATCAACGGCATCAGAATTCTCAACACCATGCTGGAAGTAATAATACAAATTTTCAGTGGGGTTCTCACTCTAGAATGGCTGGTTTTGGTAGCACAGATGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTAAGGAGGGAGGGTTCTTTTCACAAACCTATGAAAAAAAGGAAGACAGATGATATTCGCATTAATGGTTATCAAGGATACATGGCAAATCATATGGCTACAAGAGATGGAGCGGCTGGTTTGGGCACCTTCTCTGAACCAGGAAAGGTTAACTTGGAAACAGAAAGGAATTATGGTTTTTCAGGTCTTCCTGGCAAGCATTACAGCACAAGAGAATTGTCAATGTTTGAAATACGAAACATGTTGATGGATAAGTCGCGCATTGAAATTCGTAAGAAACTTCAAGAATGGAAATCAATGGCTGAAGCTAAGATTAACAAGGATAAAGAGAATAAGAGACAGAAAAGCACATTTAATGGCAAAACAACTGGTTCAGAGAAGCTGAGAGAGACTGCTGTTAATGGTAACAGGCATCTGGACATTGATTCTTTCCCTGTCAGATCTGATGATACAGTTAAGAAGAACCAAGCTTACGTTACAATCACTGTTCCAGACCCTGATTTTCATAATTTTGACTTGGATAGAGATGAAAATTCCTTTGCGGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGTTATTATGCTAGAATTCACAAGGTGATCTCCATGAAGCCATTTAAAATGCGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGAACTGGCAAGCATGAAATAACTGAATCATTAAATTCATTCTCTCACAAGGTTAGGTGGACAAAAGGCACAAGAGGTGTTGTTCGAATCTTTCCTGGGAAGGGGGAGGTCTGGGCTCTTTACAGAAACTGGTCTCGTGATTGGAATGAACATACCCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTTCTTGAAGATTTCAATGAAGAACAAGGCATATTAGTTACCCCCCTTGTTAAGGTTGCTGGTTTTAGGACTGTGTTTCAAAGGCACATGGACCGTGATCGGGAGAGGATGATTCCTAAAGAGGAAATGTTTCAATTCTCTCATCAGGTTCCGAATTACTTGCTTACTGGCCAAGAAGCTGATAATGCTCCAAAGGATTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGACCTCCTCCAGATAATAACAGAAGCTAATGAGACATCGAAAAATGCTTTGGAAGCCTGA
Predicted protein sequences of Glyma04g41630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g41630.1 sequence type=predicted peptide gene model=Glyma04g41630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPELEDITQLLTTIDIYTSAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTPNHVGSQPEAPSSNGYYNLKKNVNSNVRTGNNSGRAPSAPVKKAETFWTICNRCRTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKPPNWSSHQRHQNSQHHAGSNNTNFQWGSHSRMAGFGSTDGSTSVAAQAASVVQQASEKVRREGSFHKPMKKRKTDDIRINGYQGYMANHMATRDGAAGLGTFSEPGKVNLETERNYGFSGLPGKHYSTRELSMFEIRNMLMDKSRIEIRKKLQEWKSMAEAKINKDKENKRQKSTFNGKTTGSEKLRETAVNGNRHLDIDSFPVRSDDTVKKNQAYVTITVPDPDFHNFDLDRDENSFAEDQVWAAYDDDDGMPRYYARIHKVISMKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSRDWNEHTPDEVIHKYDMVEVLEDFNEEQGILVTPLVKVAGFRTVFQRHMDRDRERMIPKEEMFQFSHQVPNYLLTGQEADNAPKDCRELDPAATPLDLLQIITEANETSKNALEA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
