SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53120 | AT | Annotation by Michelle Graham. TAIR10: spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359 | SoyBase | E_val: 0 | ISS |
| GO:0006596 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004766 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016768 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermine synthase activity | SoyBase | N/A | ISS |
| KOG1562 | KOG | Spermidine synthase | JGI | ISS | |
| PTHR11558 | Panther | SPERMIDINE SYNTHASE | JGI | ISS | |
| PTHR11558:SF11 | Panther | PUTRESCINE N-METHYLTRANSFERASE | JGI | ISS | |
| PF01564 | PFAM | Spermine/spermidine synthase | JGI | ISS | |
| UniRef100_A2VC29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Spermine synthase n=1 Tax=Lotus japonicus RepID=A2VC29_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JYT8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYT8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g41600 not represented in the dataset |
Glyma04g41600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g13210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g237300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g41600.2 sequence type=transcript gene model=Glyma04g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGTGCTTTTAAATTGAGATTCTTCTTACTTGGCCATTGTTTTTCCACTTTACTCTGCTATTTAGTCTGGTTTTAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAGCAATGCATGATGATTGCCTATTGTAACCCCTAAATAAGAAATTTTGACGACATGGTCATTGACAAGTGTGGGATAAATAGGAATCTGGTGTGATTAATTTTAGGTTTACCAATTATGTGTGTTGTGGAGTCTGATTAGCTAGGTTAATCTTAGTCGATTTCAGATGGCTTTCTCATATCTAGTTTACAATGCTATATTATTTAGGTTTTTTAAGCACATACTCCTAAGACGCGCATTATCAATTATTAAATAATACATGGAAAGAATTTGCGATGGGAATGTAGGTTTTTAGAAATTTGATTTCATAATGAAACTTTCTCGGCATGTATATTTTATTTTATGCATTCATCGTAAATTTGGAACAGTTATTGATTTGAATGTTAAGTATTAAATAATACCATATAATTAGTCTCTGATTTCAATGAATACCTT
>Glyma04g41600.1 sequence type=CDS gene model=Glyma04g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAG >Glyma04g41600.2 sequence type=CDS gene model=Glyma04g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGTAATGGGCCAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAGTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACTGTTTTAGTTGTTGGTGGTGGAGATGGTGGTGTTCTCAGGGAAGTAGCCCGCCACAGCTCTGTTGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAATTTTTTCCACAGTTAGCTATTGGGTTTGAAGATTCTCGAGTACATCTGCATGTTGGTGATGCTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGGTCCTGCCCAGGAACTTGTTGAGAAACCTTTTTTTGATACAATAGCTAGGGCACTAAGGCCTGGCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTTTGTGAATCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCTTGAAGAGAGAAGTGAGTGTGCTCCGTGATCTCTCCCTTCAGTAG
>Glyma04g41600.1 sequence type=predicted peptide gene model=Glyma04g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDGAGRGLECQKTMDGKVSNSNGPEKEIPSCCLKAKASIPESEAKFHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIQSPKTVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAIGFEDSRVHLHVGDAVEFLKSACEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVCYAWASVPTYPSGVIGFLLCATEGPPVDFVNPINPIEKLEGANEHKRELRFYNSEMHSAAFALPAFLKREVSVLRDLSLQ* >Glyma04g41600.2 sequence type=predicted peptide gene model=Glyma04g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDGAGRGLECQKTMDGKVSNSNGPEKEIPSCCLKAKASIPESEAKFHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIQSPKTVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAIGFEDSRVHLHVGDAVEFLKSACEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVCYAWASVPTYPSGVIGFLLCATEGPPVDFVNPINPIEKLEGANEHKRELRFYNSEMHSAAFALPAFLKREVSVLRDLSLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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