Glyma04g41590 - SoyBase

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Report for Sequence Feature Glyma04g41590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47445128
stop:	47451217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52210	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:19367035-19369293 FORWARD LENGTH=354	SoyBase	E_val: 5.00E-167	ISS
GO:0006370	GO-bp	Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12189	Panther	MRNA (GUANINE-7-)METHYLTRANSFERASE	JGI		ISS
PF03291	PFAM	mRNA capping enzyme	JGI		ISS
UniRef100_G7J6T6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA cap guanine-N7 methyltransferase n=1 Tax=Medicago truncatula RepID=G7J6T6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYT7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41590

Paralog	Evidence	Comments
Glyma06g13240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g237200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g41590

Limit To All Plant Sequences

>Glyma04g41590.1   sequence type=CDS   gene model=Glyma04g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAGTCTACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGCTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGGGATGCCGACGCTGATAAATGGGTCGACGCTCAAATTGGCCACTACATTGGAATTGATGCGCCTTCGTCTGGCATAGAGCAAATGCGAGAAGCTTGGGAGATTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGATCCTTGCACGAAGAATACAGAAACGCATTTGGAGGAGAAGACTAACGTGGCTGATGTTGTCTGCTGTTTGCAGCATTTGCAGCTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCATCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCGTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCCATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGAGCACAATTAGCAGGCCTGCTAACGCACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGGTCTCTACACCACATTTATATTTCAAAAGCCTGACCCGGAAATTGCACCCCCAATTGCGACTCCATTATTGCCAGATGTTAGTTATAATCTCGACGAGGTAACCATTCGGCCAGATGATGAAATAATAAATGGGCATGCAGTAGAACCTGCTATTGGGCTGGGCAAGATAAGCGAACAAAAAGGGATATTGGGCCCAGGCCCTGCAGATTTACGTTTTCCAGAAGCACTTTGA

Predicted protein sequences of Glyma04g41590

Limit To All Plant Sequences

>Glyma04g41590.1   sequence type=predicted peptide   gene model=Glyma04g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQSTQQRLYDFAKMALINIFAHPYATVCDLYCGDADADKWVDAQIGHYIGIDAPSSGIEQMREAWEIHRKSYTAEFFELDPCTKNTETHLEEKTNVADVVCCLQHLQLCFETEEKARKLLHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITFEVEEEKFPLFGKKYQLKFANDVSAETHCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNRAQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIATPLLPDVSYNLDEVTIRPDDEIINGHAVEPAIGLGKISEQKGILGPGPADLRFPEAL*

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