Glyma04g41520 - SoyBase

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Report for Sequence Feature Glyma04g41520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47385905
stop:	47394003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53440	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:21683679-21687970 REVERSE LENGTH=1181	SoyBase	E_val: 6.00E-114	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JYT1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYT1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5SN81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit 10-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5SN81_ORYSJ	SoyBase	E_val: 2.00E-52	ISS

Expression Patterns of Glyma04g41520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41520

Paralog	Evidence	Comments
Glyma06g13300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g236700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g41520

Limit To All Plant Sequences

>Glyma04g41520.1   sequence type=CDS   gene model=Glyma04g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCGCAGTTCGAAGCACAAATCGAGCAAGCACAGTTCGCGTGACGCGAGGGAGCACTCCGACTCCGAGCGAGATTCCGGCGCCAAGGATCGGAGGAGCAAGGAGGAGAGCGGCGGCGGCGGCGCGAAGAAGGATTCGAGTTCCGCGGAGAAGCGGAGGCCGGATTCGAAGGACGCGCACGGGAACGGGGAGTATTCCGACGAGTACGCGTCGTCGTCGAAGCGGCGCAAGGACGGCGGAGGCGGGGGAGACCGGTGGAATGGCGGCGAAGAGGGATCGAAGAAGTCGAAGACGGTGGGGGATTCGAAGAGCAGGAGGAGGGACGGGAGCGTGGGAGTGTACGGTGAGGGCGAGGAGGTGAAGAGGAGTAGCGGGAAAGGGGATGGGAAGCATAGGGATTCGGCATCGGGGCGAATCAGGGAGGGTGCGGCGGAGAAGGAGAAAGAGAGGAAATTTAAAGAAGGTGGTAGGAGTGAGGAATCGGTTGATGAGCAAGAGCAGCGTGTATCCAAGCAGGTCTTTGAAATTAATGATTCAAAGAAAATTGATGAGTTGCAAGGCCCTGAACCTGATAATCAGCTTGAGAGGCGAACAAGGAAGAAGAGGGACGACTATAGTGATGGTGACAAGCATCAAGATAATGCTGGAGATGGTTATGATAGGCATTTGTCTTCTAGGGATGACATTGCCAAGGATGGAAAAAAGAAGGATGATAGGCGAAAAGAGGAGAAACATAGAGACAAATATAGGGAAGAAATAGACAGGGATAACAAACATCGACATGACAAGCAACATGATGAGCGCCCTGCTAAAGATCATACTACCATTAGGTCTGATGATAAACATGCTAGGGAAGAAAAGAATAGTCTAGAATCACGCCAAAAGAGAACCAGGCTTCCAGAGAGTGACAGGGACCATAACCGTGATCGCGACGGGGATCGTGATTTGGAATCTGTTCGGGATCGAGAACGCCACGGTGAACGTGATCGTGATTATGATATTGACAGGGATCATGATTATGACAGAGATCGAGATTGGGACTGGGATCGAGATCATGATCGTGACCGAGACAGGGATCGTGACCGTCGCCGTGATTGTGATGGGTCACATGTGGATGATAGAAGTGGTAGAGGCAAAGAGAGTGGAACAAAGAAAAGAACTTTGGATGATCGTGATGATTATAGTGACTCTAAATCTAGAGCTGTTAAGAGCTACTATCCTGATGCAGAGAAGAGGAGTTTGAGCACCAGCAGAGCTGAATCTGATGTTGATAGAGGAAGATCTCAACCTCGACAAGCTCATGCAGATTCATCTGGAACTAGCAATAAACACAGATCATCTCCTGCCTCAAATACACATATTGGCAAAGATGACTATAGAAATGCTAAAGCGGAAGATTCAAAGTACAGAGACCCATCAGTAGAACAGAGAACCAAAGGCTCAAGAGAGGGTTACTCTGGGACATCAGATAGAGGTCCTAAATACAAATTAATGGAAAAACCCATTAAAATAGATGAATGTCCTGCTGGAGACTTGTCAACTGAAAGATCTTCCAGTGCCAAGGCTTCTCCTGGGGGCCTGATGGAAAGATCTCCTTCATCAACAAGCATTGAGCGCAGGTATGTGAATAGAAGTAGTGTTAAGCGGAATCTTGAAATTGATGAAAGTGGAAGGAGGAACAGTACTGATGTAAGAGATTTCTCTACTTCTGATGATAGACTTGGCTGGGAGTCTACTCTAGAGAAACCACTCTTGGATGAGCCCTCTCAAGCAGATTCATCTTTATATGGTAGGACTAATCAGAGCAATGCATCATTGATTCCACCCCCACCTGGTTTCAGGGCTACCTTAGATAGACCTTATATGGGTTCTTTAGAGGATGATGTTAGAGATAACTCTAATTCACGATACAGAAGAAGTAGTGAACCTGGATTTGGAAGAGGACATGGTGGCAATTCCTGGAGGGCAGTTCCAAACTGGAATTCACCAGTACCAAATGGATTTGTTCCCTTCCCCCCTGGGCCAGCTCATGGAGGTTTTCAAACAATGGTGCCGCAGTTTACATCTCAATCTCTCTTTGGTGTTAGGCCTCCTATGGAAGTTAACCACGCTGGCATTCCTTATCATATTGCTGATGCTGACAGATTTCCAGGTCATTTGCGCCCACTTGGGTGGCAAAATTTGATGGATGGTACAGGAACTGCTCATTTGCATGGATGGGATAACAATAATGGTGTCTTCAGAGATGATCCTCACATGTATGGTGGTTCTGATTGGGATAGGAACAGGCATTCCACTAATAGTCATGGATGGGAATCTGGTTCAGAGACTTGGAAAGAGCAGAATTGTGATTCAAAGAAGGAATTGCCTTCCCCTGCCTGCAAAGATGAACCAGATCCTGCCCTGGTTGATAATGGTTTGACTGATCAGACAAGTCAGATGTCTCAGGATGAACATAACCGGGAAGAACTTGTTGAGAAATCTCCTGAAAGAAAGTTGTCCGGTCTCAGTTCTCCAGCAGAAGTACCATTGAACTCTTCATCCTCAACTGTTCTTAAAAAGGTGCCTGACACTTCGATGCCAATTGACAATACTTCCCTCTTCAGCCGTTTCTACCTTTCCAAACTTGACATTTCGGTGGACTTAGTACTGCCAGAATTGTATGACCAGTGCATGTGTGCTCTGAATATTGACAAGAATGCTACAGGTGATGCAGTTGCCAATACAGAACTATTATTAAAGAATGGTTCAAGAACACGACAGAAATATGCTGCCACCTTTTCAAGGCATTCACCTTTTCCAGAAATTGATAATTCTATCTTCCAGAGAGCCATAGACCTTTACAAGAAGCATAGCATGAACCTACTTAACAAGGGGGAGGTAGATGATATTGCGGTATCCAACCAGATGCAAGTGGATGAGTCATTTCCTATTCCTAGTTTGGAGAATGGGCATGTTTTTGTCTCAGCATCCAATGGGATAAAAGATGTGCCAATGCCTACATTAGAATCAGGCAAAGTGGAAACTACATCTCCTGCAAAGGAGCAATTGGAAGAGATCAATCAAACCTACGGCCAAATGGAGGAAGATCATAACAAGACTGGCCTGTCTAGACCATCTTCTGGTTGTGCGAACCAAGAAGCAGCTGTAGCAGGTTTGCAAGAGAAAGAGCCCAAAATCACTTCTGATAAGGTGAATTCAGGGGATGCAAAGGAGGATTACACTTTGGCAGCTAAAAATGAAGCTCAGTTGGCCCCTACTTTGCACGGAGAGGGAGATAACATAGATAGCGAAGCCAAAACTACTGGTTTTGCCCGTTGTGCAGATGAAAAGCTGGGTTTTGGTGACACAAAGGTTAATCCTAATCCCTTAATTGTTGAGGATGGGTCTCCCAAAGCTTGTGATGCTTTGATGCCTGGTTCAAATGAGTCTGAGTCACTAATTTTAAGCCGGATACATCATTCTCCTGAAAGTACACATTGA

Predicted protein sequences of Glyma04g41520

Limit To All Plant Sequences

>Glyma04g41520.1   sequence type=predicted peptide   gene model=Glyma04g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRSSKHKSSKHSSRDAREHSDSERDSGAKDRRSKEESGGGGAKKDSSSAEKRRPDSKDAHGNGEYSDEYASSSKRRKDGGGGGDRWNGGEEGSKKSKTVGDSKSRRRDGSVGVYGEGEEVKRSSGKGDGKHRDSASGRIREGAAEKEKERKFKEGGRSEESVDEQEQRVSKQVFEINDSKKIDELQGPEPDNQLERRTRKKRDDYSDGDKHQDNAGDGYDRHLSSRDDIAKDGKKKDDRRKEEKHRDKYREEIDRDNKHRHDKQHDERPAKDHTTIRSDDKHAREEKNSLESRQKRTRLPESDRDHNRDRDGDRDLESVRDRERHGERDRDYDIDRDHDYDRDRDWDWDRDHDRDRDRDRDRRRDCDGSHVDDRSGRGKESGTKKRTLDDRDDYSDSKSRAVKSYYPDAEKRSLSTSRAESDVDRGRSQPRQAHADSSGTSNKHRSSPASNTHIGKDDYRNAKAEDSKYRDPSVEQRTKGSREGYSGTSDRGPKYKLMEKPIKIDECPAGDLSTERSSSAKASPGGLMERSPSSTSIERRYVNRSSVKRNLEIDESGRRNSTDVRDFSTSDDRLGWESTLEKPLLDEPSQADSSLYGRTNQSNASLIPPPPGFRATLDRPYMGSLEDDVRDNSNSRYRRSSEPGFGRGHGGNSWRAVPNWNSPVPNGFVPFPPGPAHGGFQTMVPQFTSQSLFGVRPPMEVNHAGIPYHIADADRFPGHLRPLGWQNLMDGTGTAHLHGWDNNNGVFRDDPHMYGGSDWDRNRHSTNSHGWESGSETWKEQNCDSKKELPSPACKDEPDPALVDNGLTDQTSQMSQDEHNREELVEKSPERKLSGLSSPAEVPLNSSSSTVLKKVPDTSMPIDNTSLFSRFYLSKLDISVDLVLPELYDQCMCALNIDKNATGDAVANTELLLKNGSRTRQKYAATFSRHSPFPEIDNSIFQRAIDLYKKHSMNLLNKGEVDDIAVSNQMQVDESFPIPSLENGHVFVSASNGIKDVPMPTLESGKVETTSPAKEQLEEINQTYGQMEEDHNKTGLSRPSSGCANQEAAVAGLQEKEPKITSDKVNSGDAKEDYTLAAKNEAQLAPTLHGEGDNIDSEAKTTGFARCADEKLGFGDTKVNPNPLIVEDGSPKACDALMPGSNESESLILSRIHHSPESTH*

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