Glyma04g41440 - SoyBase

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Report for Sequence Feature Glyma04g41440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47279727
stop:	47285633
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24260	AT	Annotation by Michelle Graham. TAIR10: prolyl oligopeptidase family protein \| chr5:8234865-8237810 REVERSE LENGTH=746	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG2281	KOG	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases	JGI		ISS
PTHR11731	Panther	PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED	JGI		ISS
PTHR11731:SF12	Panther	DIPEPTIDYL PEPTIDASE IV	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
PF00930	PFAM	Dipeptidyl peptidase IV (DPP IV) N-terminal region	JGI		ISS
UniRef100_G7J6W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dipeptidyl peptidase n=1 Tax=Medicago truncatula RepID=G7J6W0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYS1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYS1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41440

Paralog	Evidence	Comments
Glyma06g13410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g236000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41440

Limit To All Plant Sequences

>Glyma04g41440.2   sequence type=transcript   gene model=Glyma04g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAAACTTAAAACCAGTTTCAAGTTATTCGTGCCTGTCAATATCAGGGTAACCTTTTACCTTCTTTTGTCCCTTTTTATTTATGTTTCTGGTCTCCTTTACTTTGTTGTTCTCCACCTGAATAATATTCTCAAGTTTTTACCTTCTAATGATTTTATGTCCTCTCTTATAAAATAAAACTTCTGTTATTTTGGTCTTTCGAGCACATTCAGTCAGGCTCAATGGCAGAGGAATTATTCGTAATTAAGCATTGAAGAGTCCTTTAATTCCTCTCTGTTAATTTTCATTGTAATTGAATCTTGGTGTAAATGTTGTTAAACTATTAATACGCTTGCTATTGTCTTTGTAGTAAAATTGTTATTTTTATTGCTGGCATAATTACCCATGCTCTTTTGCAGTTCAATCTCATACCTGTATGTGTATCTCTAATGCAATCAGTTGATGAATGAGAAGAGGAATCCAAAACGTCAAAAACCACTGCCTTTCAGCATGCCTGTGACAGACTCAAATGATCCGCAGAATTTTGATGATAACATTCTTTTCCCTGTTGAAGAGATTGTACAATACCCGTTGCCCGGATATGTGTCGCCAACTTCAATAAGTTTTAGTCCCGATGATAGTTTAATTTCTTATTTATTTAGTCCTGATAACTCTTTAAACAGAAAGGTTTATGCATTTGATCTGAAGACCAATACACAAGAATTGTTATTCAGTCCCCCTGATGGTGGACTCGATGAAAGTAATATTTCTCCGGAAGAAAAGTTGAGGCGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCACTGCCTGCTGGGATTTATATTCAGGACATTCCCCATTCAAAAGCAGAGCTCAAGCTTCCAAGTGTATTAGGTTCACCCATTATTGATCCACATCTCTCTCCAGATGGATCAATGCTTGCCTATGTAAGAGACTGTGAGTTGCATGTTCTGAATCTCTTGTCTAATGAATCAAAGCAGTTGACCCATGGGGCAAAAGAAAATGGTTTGACTCATGGGCTTGCAGAATATATAGCTCAGGAGGAGATGGATAGAAAAACTGGATATTGGTGGTCACTGGACAGTAAATATATTGCTTTCACTGAAGTTGATTCTTCTGAAATACCACTTTTTAGAATTATGCACCAAGGGAAGAGCTCAGTCGGTTTAGAGGCACAGGAAGACCACCCTTATCCTTTTGCAGGAGCTTCAAATGTTAAAGTGCGCCTTGGGGTTGTTTCAGTAGCTGGAAGCTCCATTACTTGGATGGATCTTCTCTGCGGGGGCACAGAACAGCAAAACAATGAGGAGGAATATTTGGCAAGAGTCAATTGGATGCATGGAAACATTCTCACTGCTCAGATTTTGAACAGGCACCACACTAAAATAAAGATCGTTAAGTTTGATATTAGAACAGGCCAAAGGAAAAATATATTGTTCGAAGAAAACAGCAGTTGGATCAATATACATGACTGTTTCACACCTCTTGATAAAGGAGTTACCAAATTTTCGGGTGGATTTATCTGGGCTAGTGAGAAAACAGGATTTAGACATCTTTATCTTCATGATGCAAATGGGACTTGTTTAGGACCCATCACTGAAGGTGAATGGATGGTTGAGCAAATTGCCGGTGTGAATGAGGCTACAGGTCTAATATATTTTACTGGGACCTTAGATGGTCCTCTGGAGTCCAATTTGTATTGTTCCAAACTTTTTGTTGATGGAAGTCAACCACTTCAGGTCCCTGTCAGACTTACGCACAGCAAGGGGAAGCACATTGTGGTCCTTGATCATCATATGCGAAATTTTGTTGATATTCATGATTCCCTTGGTTGTCCTCCTAGGGTGTTACTGTGCTCGTTGGAAGATGGAAGTTTAATCAAGCCTTTATATGAGCAGTCATTTACAATTCCAAGGTTCAAAAAGCTTCAACTTGAGCCACCGGAGATTGTTGAAATACGGGCTAATGATGGCACTACATTGTATGGAGCCCTATATAAGCCTGATGCTTCAAGGTTTGGACCTCCACCTTACAAAACTATGATCAATGTTTATGGTGGTCCAAGTGTACAGCTTGTTAGTAACTCTTGGCTAAGTACAGTTGATCTGAGAGCACAATATTTGAGAAACCAAGGCATCTTAGTTTGGAAGTTAGACAACAGAGGAACTGCGAGACGGGGGTTGAAATTTGAAAGCTATTTAAAACAAAAACTTGGTCAAATTGATGCTGATGATCAGCTAACCGGAGCAGAGTGGCTTGTCAAACAAGGGCTTACAAAAGCTGGTCACATTGGGTTGTACGGATGGAGCTACGGCGGGTATCTCTCTGCCATGACACTGTCAAGATATCCAGATTTCTTCAAGTGTGCAATAGCCGGTGCCCCTGTTACATCATGGGATGGATATGACACGTTTTACACAGAGAAGTACATGGGGTTGCCATCTGAAAACAAGTCAGGATATGAAAGCGGTTCTGTTATGAACCAAGTGCACCAGTTGAAAGGGCGGTTGTTGCTTGTGCACGGCATGATTGATGAGAATGTTCACTTTAGGCACACTGCAAGACTTATCAATGCACTTGTGGCAGCTGGAAAATCATATGAGCTAATAGTTTTCCCAGATGAACGGCACATGCCTCGGCGTCATAGTGACCGAGTTTACATGGAAGGGAGGATGTGGGACTTCATTCAGAGGAATCTGTAACATGACTTTTTAATTCATCTTTCATTGTTGTGTTTAGTTGAATGGGCAAAGTGGTTTCTGAAGTTCTTTTACCCAAAAGAATTGGTTTTGTTTCTTCTTGCCTTAAAGCTGATAAGCTACTTTGATGGCTATTTTGGCCCACTTCACACACCCTAACAAGAAACTCTTCTGGGTATCAAATAACTGAATAAGCCTTTAAAAGTC

Coding sequences of Glyma04g41440

Limit To All Plant Sequences

>Glyma04g41440.1   sequence type=CDS   gene model=Glyma04g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAGAAGAGGAATCCAAAACGTCAAAAACCACTGCCTTTCAGCATGCCTGTGACAGACTCAAATGATCCGCAGAATTTTGATGATAACATTCTTTTCCCTGTTGAAGAGATTGTACAATACCCGTTGCCCGGATATGTGTCGCCAACTTCAATAAGTTTTAGTCCCGATGATAGTTTAATTTCTTATTTATTTAGTCCTGATAACTCTTTAAACAGAAAGGTTTATGCATTTGATCTGAAGACCAATACACAAGAATTGTTATTCAGTCCCCCTGATGGTGGACTCGATGAAAGTAATATTTCTCCGGAAGAAAAGTTGAGGCGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCACTGCCTGCTGGGATTTATATTCAGGACATTCCCCATTCAAAAGCAGAGCTCAAGCTTCCAAGTGTATTAGGTTCACCCATTATTGATCCACATCTCTCTCCAGATGGATCAATGCTTGCCTATGTAAGAGACTGTGAGTTGCATGTTCTGAATCTCTTGTCTAATGAATCAAAGCAGTTGACCCATGGGGCAAAAGAAAATGGTTTGACTCATGGGCTTGCAGAATATATAGCTCAGGAGGAGATGGATAGAAAAACTGGATATTGGTGGTCACTGGACAGTAAATATATTGCTTTCACTGAAGTTGATTCTTCTGAAATACCACTTTTTAGAATTATGCACCAAGGGAAGAGCTCAGTCGGTTTAGAGGCACAGGAAGACCACCCTTATCCTTTTGCAGGAGCTTCAAATGTTAAAGTGCGCCTTGGGGTTGTTTCAGTAGCTGGAAGCTCCATTACTTGGATGGATCTTCTCTGCGGGGGCACAGAACAGCAAAACAATGAGGAGGAATATTTGGCAAGAGTCAATTGGATGCATGGAAACATTCTCACTGCTCAGATTTTGAACAGGCACCACACTAAAATAAAGATCGTTAAGTTTGATATTAGAACAGGCCAAAGGAAAAATATATTGTTCGAAGAAAACAGCAGTTGGATCAATATACATGACTGTTTCACACCTCTTGATAAAGGAGTTACCAAATTTTCGGGTGGATTTATCTGGGCTAGTGAGAAAACAGGATTTAGACATCTTTATCTTCATGATGCAAATGGGACTTGTTTAGGACCCATCACTGAAGGTGAATGGATGGTTGAGCAAATTGCCGGTGTGAATGAGGCTACAGGTCTAATATATTTTACTGGGACCTTAGATGGTCCTCTGGAGTCCAATTTGTATTGTTCCAAACTTTTTGTTGATGGAAGTCAACCACTTCAGGTCCCTGTCAGACTTACGCACAGCAAGGGGAAGCACATTGTGGTCCTTGATCATCATATGCGAAATTTTGTTGATATTCATGATTCCCTTGGTTGTCCTCCTAGGGTGTTACTGTGCTCGTTGGAAGATGGAAGTTTAATCAAGCCTTTATATGAGCAGTCATTTACAATTCCAAGGTTCAAAAAGCTTCAACTTGAGCCACCGGAGATTGTTGAAATACGGGCTAATGATGGCACTACATTGTATGGAGCCCTATATAAGCCTGATGCTTCAAGGTTTGGACCTCCACCTTACAAAACTATGATCAATGTTTATGGTGGTCCAAGTGTACAGCTTGTTAGTAACTCTTGGCTAAGTACAGTTGATCTGAGAGCACAATATTTGAGAAACCAAGGCATCTTAGTTTGGAAGTTAGACAACAGAGGAACTGCGAGACGGGGGTTGAAATTTGAAAGCTATTTAAAACAAAAACTTGGTCAAATTGATGCTGATGATCAGCTAACCGGAGCAGAGTGGCTTGTCAAACAAGGGCTTACAAAAGCTGGTCACATTGGGTTGTACGGATGGAGCTACGGCGGGTATCTCTCTGCCATGACACTGTCAAGATATCCAGATTTCTTCAAGTGTGCAATAGCCGGTGCCCCTGTTACATCATGGGATGGATATGACACGTTTTACACAGAGAAGTACATGGGGTTGCCATCTGAAAACAAGTCAGGATATGAAAGCGGTTCTGTTATGAACCAAGTGCACCAGTTGAAAGGGCGGTTGTTGCTTGTGCACGGCATGATTGATGAGAATGTTCACTTTAGGCACACTGCAAGACTTATCAATGCACTTGTGGCAGCTGGAAAATCATATGAGCTAATAGTTTTCCCAGATGAACGGCACATGCCTCGGCGTCATAGTGACCGAGTTTACATGGAAGGGAGGATGTGGGACTTCATTCAGAGGAATCTGTAA

>Glyma04g41440.2   sequence type=CDS   gene model=Glyma04g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAGAAGAGGAATCCAAAACGTCAAAAACCACTGCCTTTCAGCATGCCTGTGACAGACTCAAATGATCCGCAGAATTTTGATGATAACATTCTTTTCCCTGTTGAAGAGATTGTACAATACCCGTTGCCCGGATATGTGTCGCCAACTTCAATAAGTTTTAGTCCCGATGATAGTTTAATTTCTTATTTATTTAGTCCTGATAACTCTTTAAACAGAAAGGTTTATGCATTTGATCTGAAGACCAATACACAAGAATTGTTATTCAGTCCCCCTGATGGTGGACTCGATGAAAGTAATATTTCTCCGGAAGAAAAGTTGAGGCGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCACTGCCTGCTGGGATTTATATTCAGGACATTCCCCATTCAAAAGCAGAGCTCAAGCTTCCAAGTGTATTAGGTTCACCCATTATTGATCCACATCTCTCTCCAGATGGATCAATGCTTGCCTATGTAAGAGACTGTGAGTTGCATGTTCTGAATCTCTTGTCTAATGAATCAAAGCAGTTGACCCATGGGGCAAAAGAAAATGGTTTGACTCATGGGCTTGCAGAATATATAGCTCAGGAGGAGATGGATAGAAAAACTGGATATTGGTGGTCACTGGACAGTAAATATATTGCTTTCACTGAAGTTGATTCTTCTGAAATACCACTTTTTAGAATTATGCACCAAGGGAAGAGCTCAGTCGGTTTAGAGGCACAGGAAGACCACCCTTATCCTTTTGCAGGAGCTTCAAATGTTAAAGTGCGCCTTGGGGTTGTTTCAGTAGCTGGAAGCTCCATTACTTGGATGGATCTTCTCTGCGGGGGCACAGAACAGCAAAACAATGAGGAGGAATATTTGGCAAGAGTCAATTGGATGCATGGAAACATTCTCACTGCTCAGATTTTGAACAGGCACCACACTAAAATAAAGATCGTTAAGTTTGATATTAGAACAGGCCAAAGGAAAAATATATTGTTCGAAGAAAACAGCAGTTGGATCAATATACATGACTGTTTCACACCTCTTGATAAAGGAGTTACCAAATTTTCGGGTGGATTTATCTGGGCTAGTGAGAAAACAGGATTTAGACATCTTTATCTTCATGATGCAAATGGGACTTGTTTAGGACCCATCACTGAAGGTGAATGGATGGTTGAGCAAATTGCCGGTGTGAATGAGGCTACAGGTCTAATATATTTTACTGGGACCTTAGATGGTCCTCTGGAGTCCAATTTGTATTGTTCCAAACTTTTTGTTGATGGAAGTCAACCACTTCAGGTCCCTGTCAGACTTACGCACAGCAAGGGGAAGCACATTGTGGTCCTTGATCATCATATGCGAAATTTTGTTGATATTCATGATTCCCTTGGTTGTCCTCCTAGGGTGTTACTGTGCTCGTTGGAAGATGGAAGTTTAATCAAGCCTTTATATGAGCAGTCATTTACAATTCCAAGGTTCAAAAAGCTTCAACTTGAGCCACCGGAGATTGTTGAAATACGGGCTAATGATGGCACTACATTGTATGGAGCCCTATATAAGCCTGATGCTTCAAGGTTTGGACCTCCACCTTACAAAACTATGATCAATGTTTATGGTGGTCCAAGTGTACAGCTTGTTAGTAACTCTTGGCTAAGTACAGTTGATCTGAGAGCACAATATTTGAGAAACCAAGGCATCTTAGTTTGGAAGTTAGACAACAGAGGAACTGCGAGACGGGGGTTGAAATTTGAAAGCTATTTAAAACAAAAACTTGGTCAAATTGATGCTGATGATCAGCTAACCGGAGCAGAGTGGCTTGTCAAACAAGGGCTTACAAAAGCTGGTCACATTGGGTTGTACGGATGGAGCTACGGCGGGTATCTCTCTGCCATGACACTGTCAAGATATCCAGATTTCTTCAAGTGTGCAATAGCCGGTGCCCCTGTTACATCATGGGATGGATATGACACGTTTTACACAGAGAAGTACATGGGGTTGCCATCTGAAAACAAGTCAGGATATGAAAGCGGTTCTGTTATGAACCAAGTGCACCAGTTGAAAGGGCGGTTGTTGCTTGTGCACGGCATGATTGATGAGAATGTTCACTTTAGGCACACTGCAAGACTTATCAATGCACTTGTGGCAGCTGGAAAATCATATGAGCTAATAGTTTTCCCAGATGAACGGCACATGCCTCGGCGTCATAGTGACCGAGTTTACATGGAAGGGAGGATGTGGGACTTCATTCAGAGGAATCTGTAA

Predicted protein sequences of Glyma04g41440

Limit To All Plant Sequences

>Glyma04g41440.1   sequence type=predicted peptide   gene model=Glyma04g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEKRNPKRQKPLPFSMPVTDSNDPQNFDDNILFPVEEIVQYPLPGYVSPTSISFSPDDSLISYLFSPDNSLNRKVYAFDLKTNTQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTSSKRKAVMVPLPAGIYIQDIPHSKAELKLPSVLGSPIIDPHLSPDGSMLAYVRDCELHVLNLLSNESKQLTHGAKENGLTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVDSSEIPLFRIMHQGKSSVGLEAQEDHPYPFAGASNVKVRLGVVSVAGSSITWMDLLCGGTEQQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFDIRTGQRKNILFEENSSWINIHDCFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCLGPITEGEWMVEQIAGVNEATGLIYFTGTLDGPLESNLYCSKLFVDGSQPLQVPVRLTHSKGKHIVVLDHHMRNFVDIHDSLGCPPRVLLCSLEDGSLIKPLYEQSFTIPRFKKLQLEPPEIVEIRANDGTTLYGALYKPDASRFGPPPYKTMINVYGGPSVQLVSNSWLSTVDLRAQYLRNQGILVWKLDNRGTARRGLKFESYLKQKLGQIDADDQLTGAEWLVKQGLTKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAIAGAPVTSWDGYDTFYTEKYMGLPSENKSGYESGSVMNQVHQLKGRLLLVHGMIDENVHFRHTARLINALVAAGKSYELIVFPDERHMPRRHSDRVYMEGRMWDFIQRNL*

>Glyma04g41440.2   sequence type=predicted peptide   gene model=Glyma04g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEKRNPKRQKPLPFSMPVTDSNDPQNFDDNILFPVEEIVQYPLPGYVSPTSISFSPDDSLISYLFSPDNSLNRKVYAFDLKTNTQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTSSKRKAVMVPLPAGIYIQDIPHSKAELKLPSVLGSPIIDPHLSPDGSMLAYVRDCELHVLNLLSNESKQLTHGAKENGLTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVDSSEIPLFRIMHQGKSSVGLEAQEDHPYPFAGASNVKVRLGVVSVAGSSITWMDLLCGGTEQQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFDIRTGQRKNILFEENSSWINIHDCFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCLGPITEGEWMVEQIAGVNEATGLIYFTGTLDGPLESNLYCSKLFVDGSQPLQVPVRLTHSKGKHIVVLDHHMRNFVDIHDSLGCPPRVLLCSLEDGSLIKPLYEQSFTIPRFKKLQLEPPEIVEIRANDGTTLYGALYKPDASRFGPPPYKTMINVYGGPSVQLVSNSWLSTVDLRAQYLRNQGILVWKLDNRGTARRGLKFESYLKQKLGQIDADDQLTGAEWLVKQGLTKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAIAGAPVTSWDGYDTFYTEKYMGLPSENKSGYESGSVMNQVHQLKGRLLLVHGMIDENVHFRHTARLINALVAAGKSYELIVFPDERHMPRRHSDRVYMEGRMWDFIQRNL*

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