Glyma04g41430 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g41430

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47268331
stop:	47274649
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24270	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr5:8238781-8240179 REVERSE LENGTH=222	SoyBase	E_val: 1.00E-105	ISS
GO:0005513	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of calcium ion	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0030007	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis	SoyBase	N/A	ISS
GO:0042539	GO-bp	Annotation by Michelle Graham. GO Biological Process: hypotonic salinity response	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005955	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: calcineurin complex	SoyBase	N/A	ISS
GO:0004723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF17	Panther		JGI		ISS
UniRef100_G7J6W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein 4 n=1 Tax=Medicago truncatula RepID=G7J6W3_MEDTR	SoyBase	E_val: 3.00E-129	ISS
UniRef100_I1KAS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KAS3_SOYBN	SoyBase	E_val: 4.00E-158	ISS

Expression Patterns of Glyma04g41430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41430

Paralog	Evidence	Comments
Glyma06g13420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g235900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41430

Limit To All Plant Sequences

>Glyma04g41430.3   sequence type=transcript   gene model=Glyma04g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCGATTACGATTTTACTCTAGAGTTGGCTTGATTATAAAAACGCAAACTCCGAATTGCAACCCAAGCTATAGGCTTAGCTTAATAAACGTTGAAACTGCGCCATCTCCATTGCTGTTCTCTCTTCTTGCTATTATAATCCAATTCAAGAAGTTCGTTCAACTTTTGTGCTCAACAAGTCTAACATAACAGATATTCAAATTGAGCATAATTGTGATTCAAACTTTGGTCTTTCCCTGGAATGAATCCATTGTTTGTCAAGAAATTTGGAAGTGATTTTTGCGGTTCTATTTAATGGGCTGCTACTGCTCAACTTCAAAGAAAACGGAAGCACAAGGTTATGAGGAACCCACCATTCTATCATCTGAGACACCTTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAGTGAAGTAGAGGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTGTTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCGCTATTCAGGAATAAAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTATTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCAGCTTTAGAAGACAAGATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTGAACGAGAGGAGGTATGGTTTTCTTTTTCTTTAGTTATTATAATATTACGCTATGGTTCTTTAGTCTTATCCATAATTCATAGATATATGTATGTGCTTGTTCAATATACATTTAGATCAACCCTTTACTCCCACTAATGGTTTATCTGATCTGCAGTTGAAGGAGATGGTATTGGCACTTTTGCATGAATCAGATCTTGAGCTTTCGGATGATATGATTGAAACCATTGTGGATAAGACTTTTAGTGATGCTGATATAAACGGTGATGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCCAAGCATCCATCCTTGATAAAGAATATGACACTTCCATACTTGAAGGATATTACCTTGGCTTTTCCCAGTTTTGTCATAAGAACAGATATTGAAGAGTCAGAGATGTGACTTTGGGAGGTTTTGGCTTCACCAATAATGATATCTCTTTGATTTCGTCTCTTGATATATTGTTGCTACATGTTAAGAGATGACCTTACCTGCGGTGCCCAAGACAAGAATAAAATTTCGTTTATGATTCCTGGGCAAAACTTCTAAACCTGGTTTTGCAAATGCTCAGCCACTTCTTTGTAGTAGCTGAACCTGTGCTGATAGTGATATCTAAGGTTACGAATTATTCACATGAACTTTTAATTCCAGTGCAAGGTTAACTTGTACATTATATATGTATATATGAGAGATGTAAGTAGGGTATAGTAACCCATGTTACTCGGACATTTTGCTGCTTGTGAGTTTGGAGGTATTTTGAGAATTTTGCCTTTGGATAGTTGTTTGAATAACTGTTAGCATGATCCCTATGTTAATTTGGGCATCTTTCCTCTGTGCTTAACTGCTTACAGCTTTAATATGCTGGAAGATTATTTTCAATGCTTTCTCTTCACTTAGAAATCTTTATCCAGAGCTCCACATTCCTGTGCCTCATCGTTTCCGTTATGTTTTCGTGAGATTTATGATTGTTAAACATGGATTGAATATAGACAGCAATGTTAGAGTTTCCAATGTTGTGCTTTTTTTAAGCCTGTCTTTTTGGGCTGATTTTGACTCTGTAACTTCCCGAGTTTGGGCCTAGTTATTGGCACTCTCATATTGCTATTTAAATCCCCTCCCCTCCCCTCAAAGAGTTGGTACTTTTTATGTTGACGAAAATCTCCCT

Coding sequences of Glyma04g41430

Limit To All Plant Sequences

>Glyma04g41430.2   sequence type=CDS   gene model=Glyma04g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCTACTGCTCAACTTCAAAGAAAACGGAAGCACAAGGTTATGAGGAACCCACCATTCTATCATCTGAGACACCTTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAGTGAAGTAGAGGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTGTTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCGCTATTCAGGAATAAAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTATTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCAGCTTTAGAAGACAAGATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTGAACGAGAGGAGTTGAAGGAGATGGTATTGGCACTTTTGCATGAATCAGATCTTGAGCTTTCGGATGATATGATTGAAACCATTGTGGATAAGACTTTTAGTGATGCTGATATAAACGGTGATGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCCAAGCATCCATCCTTGATAAAGAATATGACACTTCCATACTTGAAGGATATTACCTTGGCTTTTCCCAGTTTTGTCATAAGAACAGATATTGAAGAGTCAGAGATGTGA

>Glyma04g41430.3   sequence type=CDS   gene model=Glyma04g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCTACTGCTCAACTTCAAAGAAAACGGAAGCACAAGGTTATGAGGAACCCACCATTCTATCATCTGAGACACCTTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAGTGAAGTAGAGGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTGTTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCGCTATTCAGGAATAAAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTATTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCAGCTTTAGAAGACAAGATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTGAACGAGAGGAGGTATGGTTTTCTTTTTCTTTAGTTATTATAATATTACGCTATGGTTCTTTAGTCTTATCCATAATTCATAGATATATGTATGTGCTTGTTCAATATACATTTAGATCAACCCTTTACTCCCACTAA

Predicted protein sequences of Glyma04g41430

Limit To All Plant Sequences

>Glyma04g41430.2   sequence type=predicted peptide   gene model=Glyma04g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCYCSTSKKTEAQGYEEPTILSSETPCEYHDPSLNVTVSEVEALHELYKKLSNSIVEDGLIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAALEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLELSDDMIETIVDKTFSDADINGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVIRTDIEESEM*

>Glyma04g41430.3   sequence type=predicted peptide   gene model=Glyma04g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCYCSTSKKTEAQGYEEPTILSSETPCEYHDPSLNVTVSEVEALHELYKKLSNSIVEDGLIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAALEDKITFAFRLYDLRQTGFIEREEVWFSFSLVIIILRYGSLVLSIIHRYMYVLVQYTFRSTLYSH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain