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Report for Sequence Feature Glyma04g41420

Feature Type:gene_model
Chromosome:Gm04
Start:47249948
stop:47252989
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g41420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49240AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:18256086-18257975 FORWARD LENGTH=629 SoyBaseE_val: 0ISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7J6W6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J6W6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JYR8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYR8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g41420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41420
ParalogEvidenceComments
Glyma06g13430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g235800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g41420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g41420
>Glyma04g41420.2   sequence type=transcript   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATTAATAATGCTATTATTATATTCAATTTACTTTAAAAATTTAATTACATGATATATTAAACTCCCTTTAAAAATAATTTAATATAATCTACAATCAATTTTTTTAAAAGAAAAAGTTAGGCAGGCCTTGGTGTTTGGTGTTTTTACTTTATCCCTGGATTAGATAAAGTAAAACTCCAATACCAAACACCCCATTTGGTGATGAGCATAAGTAATCTTCTGAATCTAAAGACAAAACCCTCTCTGAACCCTATCCCAACCCTATCCCTCTTCTCAGATTCATTCCATCATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGAAGTTGTTGCAACTTCTTGGTGCTTAGATGGGGAGGTATAATAACGTAATTGTGCATGGATGAGGAGTGCCTTTTTATATTGGTGTTCCTGTACTGGAGCAACAAGATCAGCCATTTATTTCTAAAAGGGATAGTGTTTTCTGGGGATTATGATGGATTTTCTTAATTTGCAAGTAAAGCAATGTTGACATTGGTGGTAGATGACAGGTTAGAAGAAAGATGAAGCAACTTATTGTATTTTGGACACCGAGATGAGTTGTGAACAACATTGTGGTGCGTAAAAAGCTTACTTCTTTTCACTGTTCTGCTATCAATGATCTCCTGATTCAACTACCTTTAAGATGCGTGCACTCGTACACACTCTTCCAAACTTTTAAATTTTGAACAAATCCAAATACCAAGATGTTGAATCAAATCTTACAATTCGTTGTGGGTTTGGATGGAATTAGATTATTTTAATACTCCATTACAGATATAATTGATTTAGGCATGTTATGGGAAATTTTTTTATAATAATCTATTTTGTTTCTATATCCGAAACAATAATTTTTATGGCAATTTTTTTTTAAGAGTAGGCTTAATTATCAGTTTAGTCCTCAAGTTATATTAAAAGATTAAAAGATTAAATATGATGTTGAAGTTTTTAAAAGATTCAATTTGATCTTTAAATATTTTTAAAATATATCAATTTAATCATTTTTGTCCAACTAAATTTTCG
Coding sequences of Glyma04g41420
>Glyma04g41420.1   sequence type=CDS   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGA

>Glyma04g41420.2   sequence type=CDS   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGA
Predicted protein sequences of Glyma04g41420
>Glyma04g41420.1   sequence type=predicted peptide   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSKATFLTHLRTLSNSHRRPSSCVSIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHVSALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKKMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLLPSKLFGNKETDLESKREGEIQALNEENTNATASEAELVEETTETEGDRASEQLTG*

>Glyma04g41420.2   sequence type=predicted peptide   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSKATFLTHLRTLSNSHRRPSSCVSIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHVSALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKKMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLLPSKLFGNKETDLESKREGEIQALNEENTNATASEAELVEETTETEGDRASEQLTG*






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