Glyma04g41390 - SoyBase

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Report for Sequence Feature Glyma04g41390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47231017
stop:	47236260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49250	AT	Annotation by Michelle Graham. TAIR10: defective in meristem silencing 3 \| chr3:18258613-18260803 REVERSE LENGTH=420	SoyBase	E_val: 5.00E-141	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016444	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination	SoyBase	N/A	ISS
GO:0016569	GO-bp	Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JYR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYR2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94A79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g49250/F2K15_110 n=1 Tax=Arabidopsis thaliana RepID=Q94A79_ARATH	SoyBase	E_val: 2.00E-138	ISS

Expression Patterns of Glyma04g41390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41390

Paralog	Evidence	Comments
Glyma06g13460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g235500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41390

Limit To All Plant Sequences

>Glyma04g41390.2   sequence type=transcript   gene model=Glyma04g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGAATATAACCGGGGAGGTGGCTGGTTAGTGCTGAGTCAACAGTGCAACTAAATTGAGAAAGCATAGAAGGAGAACAAAGGAAGATTCTGTTGCTGTTGCCCCTTTTCTTCCTTTCTCAATTTTCACATTCTATTCTATTCTGCACTCTGCACTCACTCACTCACTCAGTCATGTTTCAACCGCCCACTCCCACTGGCATCAACAAGCATTCTCTTCATACAAATCCACTATCCATCCAAGGAGCTTCTTCAGCACTGGTGCCAGTGGATTTGAATGAAGGCACTGTTGATGCAAAGGAAAGTGTGCAAAATGGAGAAATGCTACAAGTGCAATCCATCTTCCGACACTCCCAGAAACTGGAAGATGATCTACGTATGTTAGGGACAAAAATTAAGCAGCATGAGAACAACCTATATCATTTAAACTCTGAAAAAAACAAATTAGATGACTCCATTCTTCACTTGCAAGTTACTATTGGGAAATCAGAGTCTTCAAGTAAGGCCACAATTGGTGATATGGACAATCCCAACCCTACAAATGATGAGGAAGTAAATAAACAGATATTGCAGCATGAAAAATCTGCTGCTGGTATTTTGTGCCAGCTTAAGATTCGTCATGGAGCTCAGGCTTCTCATCTTACATTGACAAAGGATGTTGTGGGTATTGTTGCTACTCTGGGCAAAGTTGAGGATGACAATCTTAGCAGACTTTTCTCGGAGTATCTAGGTGTGGAGACTATGCTGGCAATTGTTTGCAAAACTTATGAAGGGGTTAAAGCTCTTGAAATGTATGATATGGAAGGCTGCATAAATAAAAGTTGTGGTCTTCATGGGCTAGGTGCTTCTATTGGAAGGGCTTTGGATGGTCGATTTCTAGTGATATGTCTTGAATATCTGAGGCCTTATGCTGGTAATTACGTGGTTAATGATGCACAACGGAAGTTGGATTTTTTAATCCCAAGATTGCCCAATGGGGAGCTTCCATCTGGATTTCTTGGTTTTGCAGTGAATATGATTAATTTAGATAGCTCAAACCTATTTTGTGTAACTCCCAGCGGTTATGGCCTCAGAGAAACTCTGTTTTATAATCTCTTTTCTCGTCTACAAGTATATAAGACAAGGGCTGAAATGATACAAGCACTTCCTTGCATAAGTGAAGGAGCTCTTTCTTTAGATGGAGGAATGGTTAGGAGTTGTGGTGTATTTTCTTTGGGCAATAGGGAAGATGTTGATGTGAGATTCCCCAGACCAGAAAGATCAATGAGACTTGATAACCACCACATTGAAATTGAGAGACAATTGAAGGATGTCAAATGGAAGAAAGAAAAGATTATGGAGGAATTAAAAAGGGAACAAATATTGTTGGACACGACGAGGTTCAATTACAATAAAAAGAAGGCTGATTATCTTAAGTTTTTGGCACAAAGTTCATCAGATGCAACTCAGATTTGCTTGTAGATGATTGAATCATGGCTGACAGCATACAATGAAGAAGAGAGCCTGTGGCTGGCAACTTTGTTTTTGTTCTTGAGCTTGTAGTTATCCATTTTGTAATCTGGCTCTGGAATGAGAATTTTCTCATTTTGATTTCTTAAATTGGAAGATAAATTTTGGATAGTAAAACAAGCACATTGATTTTTGAAGCTGGAGACCTCTCCAGTTTAAGACTTTGTTTTTCTTCCAAGTTTTGCTGTAAAGCAAAATCAGATTAGCCTTCATGACACCGGTATAAGATTTACCTTTCAGTTTGCTTGGTTTCTAGACCAGACATACAGGCTAGGACAACCTTTTTCTTGGTTCCTTGTGTATCTGTTAGCTCTTCGTACTCATGTATTGAGTGTTGATTAGAGGCTGTGAATATTGTACATCTCTGTTAACTCATTTTTTTCCGCTTTTAGTTTTAAAAAATTCATTTAACTGTAGCCCTT

Coding sequences of Glyma04g41390

Limit To All Plant Sequences

>Glyma04g41390.1   sequence type=CDS   gene model=Glyma04g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAACCGCCCACTCCCACTGGCATCAACAAGCATTCTCTTCATACAAATCCACTATCCATCCAAGGAGCTTCTTCAGCACTGGTGCCAGTGGATTTGAATGAAGGCACTGTTGATGCAAAGGAAAGTGTGCAAAATGGAGAAATGCTACAAGTGCAATCCATCTTCCGACACTCCCAGAAACTGGAAGATGATCTACGTATGTTAGGGACAAAAATTAAGCAGCATGAGAACAACCTATATCATTTAAACTCTGAAAAAAACAAATTAGATGACTCCATTCTTCACTTGCAAGTTACTATTGGGAAATCAGAGTCTTCAAGTAAGGCCACAATTGGTGATATGGACAATCCCAACCCTACAAATGATGAGGAAGTAAATAAACAGATATTGCAGCATGAAAAATCTGCTGCTGGTATTTTGTGCCAGCTTAAGATTCGTCATGGAGCTCAGGCTTCTCATCTTACATTGACAAAGGATGTTGTGGGTATTGTTGCTACTCTGGGCAAAGTTGAGGATGACAATCTTAGCAGACTTTTCTCGGAGTATCTAGGTGTGGAGACTATGCTGGCAATTGTTTGCAAAACTTATGAAGGGGTTAAAGCTCTTGAAATGTATGATATGGAAGGCTGCATAAATAAAAGTTGTGGTCTTCATGGGCTAGGTGCTTCTATTGGAAGGGCTTTGGATGGTCGATTTCTAGTGATATGTCTTGAATATCTGAGGCCTTATGCTGGTAATTACGTGGTTAATGATGCACAACGGAAGTTGGATTTTTTAATCCCAAGATTGCCCAATGGGGAGCTTCCATCTGGATTTCTTGGTTTTGCAGTGAATATGATTAATTTAGATAGCTCAAACCTATTTTGTGTAACTCCCAGCGGTTATGGCCTCAGAGAAACTCTGTTTTATAATCTCTTTTCTCGTCTACAAGTATATAAGACAAGGGCTGAAATGATACAAGCACTTCCTTGCATAAGTGAAGGAGCTCTTTCTTTAGATGGAGGAATGGTTAGGAGTTGTGGTGTATTTTCTTTGGGCAATAGGGAAGATGTTGATGTGAGATTCCCCAGACCAGAAAGATCAATGAGACTTGATAACCACCACATTGAAATTGAGAGACAATTGAAGGATGTCAAATGGAAGAAAGAAAAGATTATGGAGGAATTAAAAAGGGAACAAATATTGTTGGACACGACGAGGTTCAATTACAATAAAAAGAAGGCTGATTATCTTAAGTTTTTGGCACAAAGTTCATCAGATGCAACTCAGGCTCAGACTGCTCCTGACAGATTTGCTTGTAGATGA

>Glyma04g41390.2   sequence type=CDS   gene model=Glyma04g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAACCGCCCACTCCCACTGGCATCAACAAGCATTCTCTTCATACAAATCCACTATCCATCCAAGGAGCTTCTTCAGCACTGGTGCCAGTGGATTTGAATGAAGGCACTGTTGATGCAAAGGAAAGTGTGCAAAATGGAGAAATGCTACAAGTGCAATCCATCTTCCGACACTCCCAGAAACTGGAAGATGATCTACGTATGTTAGGGACAAAAATTAAGCAGCATGAGAACAACCTATATCATTTAAACTCTGAAAAAAACAAATTAGATGACTCCATTCTTCACTTGCAAGTTACTATTGGGAAATCAGAGTCTTCAAGTAAGGCCACAATTGGTGATATGGACAATCCCAACCCTACAAATGATGAGGAAGTAAATAAACAGATATTGCAGCATGAAAAATCTGCTGCTGGTATTTTGTGCCAGCTTAAGATTCGTCATGGAGCTCAGGCTTCTCATCTTACATTGACAAAGGATGTTGTGGGTATTGTTGCTACTCTGGGCAAAGTTGAGGATGACAATCTTAGCAGACTTTTCTCGGAGTATCTAGGTGTGGAGACTATGCTGGCAATTGTTTGCAAAACTTATGAAGGGGTTAAAGCTCTTGAAATGTATGATATGGAAGGCTGCATAAATAAAAGTTGTGGTCTTCATGGGCTAGGTGCTTCTATTGGAAGGGCTTTGGATGGTCGATTTCTAGTGATATGTCTTGAATATCTGAGGCCTTATGCTGGTAATTACGTGGTTAATGATGCACAACGGAAGTTGGATTTTTTAATCCCAAGATTGCCCAATGGGGAGCTTCCATCTGGATTTCTTGGTTTTGCAGTGAATATGATTAATTTAGATAGCTCAAACCTATTTTGTGTAACTCCCAGCGGTTATGGCCTCAGAGAAACTCTGTTTTATAATCTCTTTTCTCGTCTACAAGTATATAAGACAAGGGCTGAAATGATACAAGCACTTCCTTGCATAAGTGAAGGAGCTCTTTCTTTAGATGGAGGAATGGTTAGGAGTTGTGGTGTATTTTCTTTGGGCAATAGGGAAGATGTTGATGTGAGATTCCCCAGACCAGAAAGATCAATGAGACTTGATAACCACCACATTGAAATTGAGAGACAATTGAAGGATGTCAAATGGAAGAAAGAAAAGATTATGGAGGAATTAAAAAGGGAACAAATATTGTTGGACACGACGAGGTTCAATTACAATAAAAAGAAGGCTGATTATCTTAAGTTTTTGGCACAAAGTTCATCAGATGCAACTCAGATTTGCTTGTAG

Predicted protein sequences of Glyma04g41390

Limit To All Plant Sequences

>Glyma04g41390.1   sequence type=predicted peptide   gene model=Glyma04g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQPPTPTGINKHSLHTNPLSIQGASSALVPVDLNEGTVDAKESVQNGEMLQVQSIFRHSQKLEDDLRMLGTKIKQHENNLYHLNSEKNKLDDSILHLQVTIGKSESSSKATIGDMDNPNPTNDEEVNKQILQHEKSAAGILCQLKIRHGAQASHLTLTKDVVGIVATLGKVEDDNLSRLFSEYLGVETMLAIVCKTYEGVKALEMYDMEGCINKSCGLHGLGASIGRALDGRFLVICLEYLRPYAGNYVVNDAQRKLDFLIPRLPNGELPSGFLGFAVNMINLDSSNLFCVTPSGYGLRETLFYNLFSRLQVYKTRAEMIQALPCISEGALSLDGGMVRSCGVFSLGNREDVDVRFPRPERSMRLDNHHIEIERQLKDVKWKKEKIMEELKREQILLDTTRFNYNKKKADYLKFLAQSSSDATQAQTAPDRFACR*

>Glyma04g41390.2   sequence type=predicted peptide   gene model=Glyma04g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQPPTPTGINKHSLHTNPLSIQGASSALVPVDLNEGTVDAKESVQNGEMLQVQSIFRHSQKLEDDLRMLGTKIKQHENNLYHLNSEKNKLDDSILHLQVTIGKSESSSKATIGDMDNPNPTNDEEVNKQILQHEKSAAGILCQLKIRHGAQASHLTLTKDVVGIVATLGKVEDDNLSRLFSEYLGVETMLAIVCKTYEGVKALEMYDMEGCINKSCGLHGLGASIGRALDGRFLVICLEYLRPYAGNYVVNDAQRKLDFLIPRLPNGELPSGFLGFAVNMINLDSSNLFCVTPSGYGLRETLFYNLFSRLQVYKTRAEMIQALPCISEGALSLDGGMVRSCGVFSLGNREDVDVRFPRPERSMRLDNHHIEIERQLKDVKWKKEKIMEELKREQILLDTTRFNYNKKKADYLKFLAQSSSDATQICL*

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