SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24300 | AT | Annotation by Michelle Graham. TAIR10: Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009250 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucan biosynthetic process | SoyBase | N/A | ISS |
| GO:0010021 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009011 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch synthase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF17 | Panther | STARCH SYNTHASE | JGI | ISS | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| PF08323 | PFAM | Starch synthase catalytic domain | JGI | ISS | |
| UniRef100_Q75T80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase I n=1 Tax=Phaseolus vulgaris RepID=Q75T80_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339F19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339F19 related cluster n=1 Tax=unknown RepID=UPI0002339F19 | SoyBase | E_val: 0 | ISS |
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Glyma04g41370 not represented in the dataset |
Glyma04g41370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g13480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g235200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g41370.1 sequence type=CDS gene model=Glyma04g41370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCTCTGGAACTTGTTCCTCTCCTTCTTCTTCTGCATCCACCACCATCTCAATCTTTCAACAATTCACGATCAATAAGGCAACTTCGTTTCCCTTCTCTTCTCAATAGTAAAACTAGAAACGCCAACTTGCGATCATTTTCCGGTAACCTTCAAGGTGGCGGCGGTGCTACTTCACAAGACGGACCCTTCGCTTTCGAAGACCAAGTCTCTCACCACAAAGACGATAGAGCTCTTGTATTAGCCAGAGAAACAGACGATTTTGGCTATCTCGTTGGCTTTCGCTTGCTTCCTAATTCTGGTCTTGAAGAGTTTATGAATGTGTCACACTCTATAACTGAGGAAGATTCTAGTAGCGATGAGGTTGAAAAACCCAAGGTTGAGGATACAGAAGAAGAGGAAGCTAAGACTAGAGTGTCACATAACATTGTTGTTGTGACTTCTGAAGCGGCACCGTATTCGAAGACCGGTGGCCTTGCCGATGTTTGTGGCTCTTTGCCAATAGCACTGGCAAGCCGTGGACACCGTGTCATGGTTGTCACGCCGAGATACATTCATGGTACTTCTGAGGATCTCAAGTTTGCTGGGGCAGTTGATCTTGATCAAAGCACCAAAGTGTTTTGCTTTGGAGGTGCTCAAGAAATTGGCTTTTACCATGAGTATAGGGAAGGGGTTGACTGGGTATTTGTGGATCATCCCTCATTCCATAGACCAGGGAATCCGTATGGAGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAAGCCCCATTGGTGCTTCCATTGGGAGGGTTCAGTTATGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCTATACTTTTGGCAGCGAAGTATCGTCCACATGGGGTATATAAGGATGCACGTAGTATATTAGTGATACATAATATAGCACATCAAGGAGTGGAGCCTGCAATTACATATAGAAATTTGGGGCTACCTTCAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTACTTGGGCAAGGACGCATGCTCTTGACACGGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTTGTTACAGCTGACCGGATTGTTACAGTAAGCAAGGGCTATTCCTGGGAGATAACAACTAGTGAAGGTGGATGTGGTCTACATGATTTATTAAGCAGTCGAAAAAGTATTCTCAGTGGGATCACAAATGGAATTGATGTCACTGAATGGGACCCGTCATGTGATAAACATATTGCTTGCAACTATTCTGCTGATGACCTTTCCGGGAAGGCCGAATGCAAGATTTCTTTGCAGAAGGAATTGGGTCTTCCAATGAGGCCTGATTGTCCAATGATTGGATTCATTGGAAGACTGGACTACCAGAAAGGTATTGACCTGATTCGCTTGGCAATGCCAGAGCTCATGGAAGCTGATGTTCAGTTTGTTATGCTTGGTTCAGGAAACCCTATTTATGAAGACTGGATGAGAGCAACAGAATCAATTTATAAAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCAATATCTCATAAAATAACTGCAGGCTGTGATATACTGTTAATGCCATCTGCATTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTAGTTCATGAAACTGGGGGGCTAAGAGATACTGTTCATAATTTTAATCCCTATGCTGAAGAAAGCAGAGCTGAAAGCACTGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGCTAGCGGCTCTAAGATATGCCATTCAAACATACAATGAATACAAGTCTTCTTGGGAGGGATTGATGATAAGAGGCATGACAAGAGATTACACGTGGGTAAATGCTGCCACTCAATACGAGCAAGTCATTGAGTGGGCATTCACCGACCCTCCCTATTGCTGA
>Glyma04g41370.1 sequence type=predicted peptide gene model=Glyma04g41370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLELVPLLLLLHPPPSQSFNNSRSIRQLRFPSLLNSKTRNANLRSFSGNLQGGGGATSQDGPFAFEDQVSHHKDDRALVLARETDDFGYLVGFRLLPNSGLEEFMNVSHSITEEDSSSDEVEKPKVEDTEEEEAKTRVSHNIVVVTSEAAPYSKTGGLADVCGSLPIALASRGHRVMVVTPRYIHGTSEDLKFAGAVDLDQSTKVFCFGGAQEIGFYHEYREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLCHAACEAPLVLPLGGFSYGEKCLFLANDWHASLVPILLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYRNLGLPSEWYGALEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGCGLHDLLSSRKSILSGITNGIDVTEWDPSCDKHIACNYSADDLSGKAECKISLQKELGLPMRPDCPMIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESIYKDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPYAEESRAESTGWTFSPLTKESMLAALRYAIQTYNEYKSSWEGLMIRGMTRDYTWVNAATQYEQVIEWAFTDPPYC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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