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Report for Sequence Feature Glyma04g41260
Feature Type: gene_model
Chromosome: Gm04
Start: 47131867
stop: 47135976
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g41260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24314 AT
Annotation by Michelle Graham. TAIR10: plastid transcriptionally active7 | chr5:8277750-8279099 FORWARD LENGTH=161
SoyBase E_val: 3.00E-62 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009295 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleoid
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009508 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6T5N9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T5N9_SOYBN
SoyBase E_val: 3.00E-115 ISS
UniRef100_D7M329 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PDE225/PTAC7 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M329_ARALL
SoyBase E_val: 7.00E-60 ISS
Expression Patterns of Glyma04g41260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g41260
Paralog Evidence Comments
Glyma06g13590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g41260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g234000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g41260
Transcripts of Glyma04g41260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g41260.2 sequence type=transcript gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAATATATAGGTTTTAGAAAGTTTTGATTAGATTCCAGATAGCGCGAACACTCAACGATGGCTATCCGAATCAACTCCTTGACTCTCTCTTCCGCTTTACCTAAGATGGAGTTAAGAGGTGGAATTTCGGGCCTCTGGGTTGGCTCGCAGGTAGAAGAATTTCGAAAATTTTCTCTCTTTCCTTTGACCCCAACTGAACTTGTTTATGCATTCATTGGTTTTGCAAGATGATGCCCCAAATGCGAAAGGAGGCTCGTGGACGACGAGTTTGGAGGCGAAGAAAATTGATAAAAAAGGATGAATATATGCACCCCAAAATGGAGCGCATTCCTTTCATGGAGGAGCAGGTAAGGATGGTAAGGGAACAGGGAAAGCTCTTGACGATGGACATAGAGAGGTTAATGTTGTCAGAAGATAATCGGTTTGATTTTGTGAATGAGATAGCAGCTGAGGCCAATTCTTATGTTGAGAACAACAGGGATGAGTATGGAGGTGAGAAGAAGGCCATTCTTCATGTTTTGAGCAATCGAATGAATGATACTGGAATTTACAGGCCAGAGGCATATTATGAGTCTGATCCCTTCAAGCCCGGACCTCATTATTTGAGAGAAGAATTTACATAAAATGTTATGCTGGCATCTTAAACTAGTGACAAGAATTTACATCTTTGCTTCACTTAGCTTAATTGATTTTCTTCTTAATTAGCTGCTGTTGTTTGTATGTATGCAAATCAAAGCCATCTTCGAACCGGAAATAAATTACAATTAAGAGGTATTATTTTCTACTCTTTTCAAGGAGATTGAAAATGGATTATAA
>Glyma04g41260.3 sequence type=transcript gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAATATATAGGTTTTAGAAAGTTTTGATTAGATTCCAGATAGCGCGAACACTCAACGATGGCTATCCGAATCAACTCCTTGACTCTCTCTTCCGCTTTACCTAAGATGGAGTTAAGAGGTGGAATTTCGGGCCTCTGGGTTGGCTCGCAGATGATGCCCCAAATGCGAAAGGAGGCTCGTGGACGACGAGTTTGGAGGCGAAGAAAATTGATAAAAAAGGATGAATATATGCACCCCAAAATGGAGCGCATTCCTTTCATGGAGGAGCAGGTAAGGATGGTAAGGGAACAGGGAAAGCTCTTGACGATGGACATAGAGAGGTTAATGTTGTCAGAAGATAATCGGTTTGATTTTGTGAATGAGATAGCAGCTGAGGCCAATTCTTATGTTGAGAACAACAGGGATGAGTATGGAGGTGAGAAGAAGGCCATTCTTCATGTTTTGAGCAATCGAATGAATGATACTGGAATTTACAGGCCAGAGGCATATTATGAGTCTGATCCCTTCAAGCCCGGACCTCATTATTTGAGAGAAGAATTTACATAAAATGTTATGCTGGCATCTTAAACTAGTGACAAGAATTTACATCTTTGCTTCACTTAGCTTAATTGATTTTCTTCTTAATTAGCTGCTGTTGTTTGTATGTATGCAAATCAAAGCCATCTTCGAACCGGAAATAAATTACAATTAAGAGTATAGTTAGAGATTCAAATGGCAGCTAACTAGTTGCTGAATCCAGTAACAGCCATACTTCATCTGATCTGAACTAGAACCACGCACTATGTAGAAAATAAAAGGAAGGTATTCTAGTTTGACCACTCAAAGTAACATGGTTG
Coding sequences of Glyma04g41260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g41260.1 sequence type=CDS gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTATCCGAATCAACTCCTTGACTCTCTCTTCCGCTTTACCTAAGATGGAGTTAAGAGGTGGAATTTCGGGCCTCTGGGTTGGCTCGCAGATGATGCCCCAAATGCGAAAGGAGGCTCGTGGACGACGAGTTTGGAGGCGAAGAAAATTGATAAAAAAGGATGAATATATGCACCCCAAAATGGAGCGCATTCCTTTCATGGAGGAGCAGGTAAGGATGGTAAGGGAACAGGGAAAGCTCTTGACGATGGACATAGAGAGGTTAATGTTGTCAGAAGATAATCGGTTTGATTTTGTGAATGAGATAGCAGCTGAGGCCAATTCTTATGTTGAGAACAACAGGGATGAGTATGGAGGTGAGAAGAAGGCCATTCTTCATGTTTTGAGCAATCGAATGAATGATACTGGAATTTACAGGCCAGAGGCATATTATGAGTCTGATCCCTTCAAGCCCGGACCTCATTATTTGAGAGAAGAATTTACATAA
>Glyma04g41260.2 sequence type=CDS gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGCCCCAAATGCGAAAGGAGGCTCGTGGACGACGAGTTTGGAGGCGAAGAAAATTGATAAAAAAGGATGAATATATGCACCCCAAAATGGAGCGCATTCCTTTCATGGAGGAGCAGGTAAGGATGGTAAGGGAACAGGGAAAGCTCTTGACGATGGACATAGAGAGGTTAATGTTGTCAGAAGATAATCGGTTTGATTTTGTGAATGAGATAGCAGCTGAGGCCAATTCTTATGTTGAGAACAACAGGGATGAGTATGGAGGTGAGAAGAAGGCCATTCTTCATGTTTTGAGCAATCGAATGAATGATACTGGAATTTACAGGCCAGAGGCATATTATGAGTCTGATCCCTTCAAGCCCGGACCTCATTATTTGAGAGAAGAATTTACATAA
>Glyma04g41260.3 sequence type=CDS gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTATCCGAATCAACTCCTTGACTCTCTCTTCCGCTTTACCTAAGATGGAGTTAAGAGGTGGAATTTCGGGCCTCTGGGTTGGCTCGCAGATGATGCCCCAAATGCGAAAGGAGGCTCGTGGACGACGAGTTTGGAGGCGAAGAAAATTGATAAAAAAGGATGAATATATGCACCCCAAAATGGAGCGCATTCCTTTCATGGAGGAGCAGGTAAGGATGGTAAGGGAACAGGGAAAGCTCTTGACGATGGACATAGAGAGGTTAATGTTGTCAGAAGATAATCGGTTTGATTTTGTGAATGAGATAGCAGCTGAGGCCAATTCTTATGTTGAGAACAACAGGGATGAGTATGGAGGTGAGAAGAAGGCCATTCTTCATGTTTTGAGCAATCGAATGAATGATACTGGAATTTACAGGCCAGAGGCATATTATGAGTCTGATCCCTTCAAGCCCGGACCTCATTATTTGAGAGAAGAATTTACATAA
Predicted protein sequences of Glyma04g41260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g41260.1 sequence type=predicted peptide gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAIRINSLTLSSALPKMELRGGISGLWVGSQMMPQMRKEARGRRVWRRRKLIKKDEYMHPKMERIPFMEEQVRMVREQGKLLTMDIERLMLSEDNRFDFVNEIAAEANSYVENNRDEYGGEKKAILHVLSNRMNDTGIYRPEAYYESDPFKPGPHYLREEFT*
>Glyma04g41260.2 sequence type=predicted peptide gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMPQMRKEARGRRVWRRRKLIKKDEYMHPKMERIPFMEEQVRMVREQGKLLTMDIERLMLSEDNRFDFVNEIAAEANSYVENNRDEYGGEKKAILHVLSNRMNDTGIYRPEAYYESDPFKPGPHYLREEFT*
>Glyma04g41260.3 sequence type=predicted peptide gene model=Glyma04g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAIRINSLTLSSALPKMELRGGISGLWVGSQMMPQMRKEARGRRVWRRRKLIKKDEYMHPKMERIPFMEEQVRMVREQGKLLTMDIERLMLSEDNRFDFVNEIAAEANSYVENNRDEYGGEKKAILHVLSNRMNDTGIYRPEAYYESDPFKPGPHYLREEFT*