Glyma04g41160 - SoyBase

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Report for Sequence Feature Glyma04g41160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47020647
stop:	47023194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27745	AT	Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein \| chr4:13840530-13841279 FORWARD LENGTH=106	SoyBase	E_val: 1.00E-63	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3399	KOG	Predicted Yippee-type zinc-binding protein	JGI		ISS
PTHR13847	Panther	FAD NAD BINDING OXIDOREDUCTASES	JGI		ISS
PTHR13847:SF40	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03226	PFAM	Yippee putative zinc-binding protein	JGI		ISS
UniRef100_C6SZF2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZF2_SOYBN	SoyBase	E_val: 1.00E-73	ISS
UniRef100_G7J7H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LCR-like protein n=1 Tax=Medicago truncatula RepID=G7J7H5_MEDTR	SoyBase	E_val: 2.00E-68	ISS

Expression Patterns of Glyma04g41160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41160

Paralog	Evidence	Comments
Glyma06g13680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g233200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41160

Limit To All Plant Sequences

>Glyma04g41160.2   sequence type=transcript   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAAATCGCCCACGTTGCTACATGCTGGTTCTGGTTCGAGCGTGGAACTGTCATCACCCCCAAAACAAAAGTAACCCTACAAAAGATAAAATAAAATTGATCACTCCAAACTAAAAAGTTATAAAAAAAAAAAAAGACAAATATATTATCATCTGATCTCTACTTTCAACCATTGAAGCCACACTCAGACTCTCATGACTTTCGGGTCATCATTGAGCTTGCTGTAGTGAGGTGTTTAATCTGAAATTTGTTTGACCAAATTCATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAGCATTCCTTTCTGCTCCCCATTCTATTCATTCCGCTCTTCGTGTTGGTTCGTTCATGTTTTGTGATTGTCATCTTGTAGCAGCGCACCTGCCGAGCA

>Glyma04g41160.3   sequence type=transcript   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAAATCGCCCACGTTGCTACATGCTGGTTCTGGTTCGAGCGTGGAACTGTCATCACCCCCAAAACAAAAGTAACCCTACAAAAGATAAAATAAAATTGATCACTCCAAACTAAAAAGTTATAAAAAAAAAAAAAGACAAATATATTATCATCTGATCTCTACTTTCAACCATTGAAGCCACACTCAGACTCTCATGACTTTCGGGTCATCATTGAGCTTGCTGTAGTGAGGTGTTTAATCTGAAATTTGTTTGACCAAATTCATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAGCATTCCTTTCTGCTCCCCATTCTATTCATTCCGCTCTTCGTGTTGGTTCGTTCATGTTTTGTGATTGTCATCTTGTAGCAGCGCACCTGCCGAGCA

Coding sequences of Glyma04g41160

Limit To All Plant Sequences

>Glyma04g41160.1   sequence type=CDS   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

>Glyma04g41160.2   sequence type=CDS   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAACTGATAGGGCCTCGCTTGTACAGCTGCTCTAATTGTAGAAACCATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATGGAAGAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

>Glyma04g41160.3   sequence type=CDS   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCACTCCATGATGATATTATTTCCAAGGCTTTTCATAAACGGCCGAGCCTTTCTGTTTTCCCATGCAATGAATATTGTCACGGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTCCATACTGTTGCTGATGTTTATTGTGGCGATTGCCGTGAAGTGTTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCAAAAATTGTTAAGGAGAACTGGTAG

Predicted protein sequences of Glyma04g41160

Limit To All Plant Sequences

>Glyma04g41160.1   sequence type=predicted peptide   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

>Glyma04g41160.2   sequence type=predicted peptide   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

>Glyma04g41160.3   sequence type=predicted peptide   gene model=Glyma04g41160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSMMILFPRLFINGRAFLFSHAMNIVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW*

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