SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09150 | AT | Annotation by Michelle Graham. TAIR10: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein | chr1:2946599-2948908 FORWARD LENGTH=181 | SoyBase | E_val: 1.00E-108 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2523 | KOG | Predicted RNA-binding protein with PUA domain | JGI | ISS | |
| PTHR22798 | Panther | MCT-1 PROTEIN | JGI | ISS | |
| PF01472 | PFAM | PUA domain | JGI | ISS | |
| UniRef100_G7J7I4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Malignant T cell-amplified sequence 1-A n=1 Tax=Medicago truncatula RepID=G7J7I4_MEDTR | SoyBase | E_val: 7.00E-122 | ISS |
| UniRef100_I1JYM9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYM9_SOYBN | SoyBase | E_val: 2.00E-131 | ISS |
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Glyma04g41130 not represented in the dataset |
Glyma04g41130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g13720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g232900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g41130.2 sequence type=transcript gene model=Glyma04g41130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCAATATAAGATAACAAAAACTTTTAGTTCAAAAAACACTTACAAAAGTGCTTTCTACGGACCAAAAGGCGCAAAAGGCTTTGTCTTGACAATGTATTGGGCCTGGGCGTGACTGGTCCAAATACAGAAACACCATGCGCGGTTGCGTTTGCATCTTCTCTCTCTCTCTCCAATTTCCCTGTCACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCACTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGTCTTCTCCATCTATATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGAAGCTTGATTAAAGATGTCGTGGAAGCTTCAGTGCTTACTAATGATTGATGAATTCCTGTGTTTCTGGACCTTGATCCAGATCTTAGGAATCGTATGTGAACTTGTGGATTTGTTTTGTTATACCATGTAAACAGTGAAGAAATGAATTTTGTTGCATAGAGTGCTCTCTTTTAGTAACTATGTAGATTTCATGTAACATGGAATACACACTCTGCGTGTTGACAAATACGAAGTTTTGCTTATTTTTGGACTCCAATTGAATGTTGGAACCATGCACGGAAGTTTATTTAAACTTGATTATGCCATTAGATCTGGTTTCATACCACAGAATTATCTTTAGACCTTAAACACTCTGCGTGTTTGATTGGGGGAAAAATTGGACGTTGAAAAAAATT
>Glyma04g41130.1 sequence type=CDS gene model=Glyma04g41130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGTTTCTTCCAGATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCACTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGTCTTCTCCATCTATATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGAAGCTTGATTAA >Glyma04g41130.2 sequence type=CDS gene model=Glyma04g41130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAAAAAATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCACTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGTCTTCTCCATCTATATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGAAGCTTGATTAA
>Glyma04g41130.1 sequence type=predicted peptide gene model=Glyma04g41130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVSSRFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHLYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEKLD* >Glyma04g41130.2 sequence type=predicted peptide gene model=Glyma04g41130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKKFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHLYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEKLD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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