Glyma04g41090 - SoyBase

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Report for Sequence Feature Glyma04g41090

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46958822
stop:	46963237
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27720	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr4:13831203-13833521 FORWARD LENGTH=460	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG4332	KOG	Predicted sugar transporter	JGI		ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF315	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05631	PFAM	Protein of unknown function (DUF791)	JGI		ISS
UniRef100_G7J858	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Major facilitator superfamily domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J858_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYM6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41090

Paralog	Evidence	Comments
Glyma06g13760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g232500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g41090

Limit To All Plant Sequences

>Glyma04g41090.1   sequence type=CDS   gene model=Glyma04g41090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGTTCTTCTACACGGTGTTCGGTGGTTTGGCCGCGGTTGTGGCAGTTATGGAGCTGAGCAAGAACAACAAGGATCGAATCAACACCTCTTCCGCATTCAATTCCTTCAAGAACAACTACCTCCTCGTCTATTCCCTCATGATGGCTGGAGATTGGCTACAAGGTCCATATGTCTACTACCTTTACAGTACATATGGATACGGGAAAGGGGACATAGGACAACTCTTCATTGCTGGTTTTGGATCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCAATACAAAGTCCTGATGTTGGGCCGCATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCATGGCTTGTTGCCGAGCACTTCAAGAGGGGCTTTGATCAACAATGGCTGTCATTAACATTCTCTAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTACTTGTTGATACATTGGCTCTTGGACCTGTGGCCCCCTTTGATGCTGCTTCATGTTTTCTTGCTATTGGTATGGCCATCATACTATCTTCATGGACAGAGAATTTTGGGGATCCTTCAGAGAACAAGGACTTGCTTACCCAATTTAGGGGTGCTGCTGTGGCCATTGCTTCTGATGAAAAAATAGCCTTGCTGGGTGCTATACAGTCTCTCTTTGAAGGTTCAATGTACACCTTTGTGTTTCTGTGGACTCCTGCATTGAGCCCAAATGATGAAGAGATTCCCCATGGTTTTATTTTTGCAACATTCATGTTGGCTTCAATGTTGGGAAGCTCGCTTGCATCGAGGTTGATGTCCCGTTCTTCACTCCGAGTAGAGAGCTATATGCAGATTGTTTTCGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACGTTCTTGGTAGTTCCCTCCGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATGTTGATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTTTTGGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCGGATAAGCCAAAAACAGAAGATTGGCAAATGAAGGATAGGGATGCCGAGTCAGAACCGTTGAACATTTAA

Predicted protein sequences of Glyma04g41090

Limit To All Plant Sequences

>Glyma04g41090.1   sequence type=predicted peptide   gene model=Glyma04g41090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELFFYTVFGGLAAVVAVMELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAILSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWTENFGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMSRSSLRVESYMQIVFAVSSAALMLPILTTFLVVPSGVKGGSISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVACILQRRLMVISDKPKTEDWQMKDRDAESEPLNI*

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