Glyma04g41010 - SoyBase

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Report for Sequence Feature Glyma04g41010

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46901418
stop:	46904546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53560	AT	Annotation by Michelle Graham. TAIR10: cytochrome B5 isoform E \| chr5:21759628-21760353 FORWARD LENGTH=134	SoyBase	E_val: 4.00E-82	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0537	KOG	Cytochrome b5	JGI		ISS
PTHR19359	Panther	CYTOCHROME B5	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
UniRef100_A5Z1Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b5 n=1 Tax=Malus x domestica RepID=A5Z1Y7_MALDO	SoyBase	E_val: 2.00E-83	ISS
UniRef100_I1JYL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JYL5_SOYBN	SoyBase	E_val: 7.00E-100	ISS

Expression Patterns of Glyma04g41010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g41010 not represented in the dataset	Glyma04g41010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41010

Paralog	Evidence	Comments
Glyma06g13840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g231800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41010

Limit To All Plant Sequences

>Glyma04g41010.3   sequence type=transcript   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGTTTCATTCTTTAGATCCTCTCTTGATTCTTTCTTCTCTACAAAATTGTGGGTTTGACTTTAAAATATCTGGGTTTCATGATTTCATGGCAGTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAGAGCTTCTTTATCACATTGGACCCTGGTGAAGGGTCTGTTAGACATTTTATACAGTGTCATTTGAAGGACAGTGTTTAGTTTATTTCTGGGGTCTTTAGAATTGAATCTGGATTTGACTGGAGAACCTAATGTTGGACGATAAGTTTCGTTTCTTTTTTATTAAGGACAGTGTCATTTTAAGGGTCTTTGCTGCTTCTTTTATAACTTGTTTCTTTTTTTATTCTTCTTTATTTATCACCCTATCTCCTGGCTTAATTTTGTCACTGTAAGGCTCTTCTATTTTACGAGCATG

>Glyma04g41010.5   sequence type=transcript   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTCTATGAGGCTATTTTCGCTGCCACAAAAAAATAGTGGCATATATAAGAAGTAGTACATGGGTATGTAAGCAAAGCAGTGACCACGGAGAGAGAGAGAGAGGTTTTGACGCAACACACTTTCACTGAGAAAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAGAGCTTCTTTATCACATTGGACCCTGGTGAAGGGTCTGTTAGACATTTTATACAGTGTCATTTGAAGGACAGTGTTTAGTTTATTTCTGGGGTCTTTAGAATTGAATCTGGATTTGACTGGAGAACCTAATGTTGGACGATAAGTTTCGTTTCTTTTTTATTAAGGACAGTGTCATTTTAAGGGTCTTTGCTGCTTCTTTTATAACTTGTTTCTTTTTTTATTCTTCTTTATTTATCACCCTATCTCCTGGCTTAATTTTGTCACTGTAAGGCTCTTCTATTTTACGAGCATG

>Glyma04g41010.6   sequence type=transcript   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTCTATGAGGCTATTTTCGCTGCCACAAAAAAATAGTGGCATATATAAGAAGTAGTACATGGGTATGTAAGCAAAGCAGTGACCACGGAGAGAGAGAGAGAGGTTTTGACGCAACACACTTTCACTGAGAAAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAGAGCTTCTTTATCACATTGGACCCTGGTGAAGGGTCTGTTAGACATTTTATACAGTGTCATTTGAAGGACAGTGTTTAGTTTATTTCTGGGGTCTTTAGAATTGAATCTGGATTTGACTGGAGAACCTAATGTTGGACGATAAGTTTCGTTTCTTTTTTATTAAGGACAGTGTCATTTTAAGGGTCTTTGCTGCTTCTTTTATAACTTGTTTCTTTTTTTATTCTTCTTTATTTATCACCCTATCTCCTGGCTTAATTTTGTCACTGTAAGGCTCTTCTATTTTACGAGCATG

Coding sequences of Glyma04g41010

Limit To All Plant Sequences

>Glyma04g41010.1   sequence type=CDS   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAG

>Glyma04g41010.3   sequence type=CDS   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAG

>Glyma04g41010.5   sequence type=CDS   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAG

>Glyma04g41010.6   sequence type=CDS   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGTACCACTAAAACGTACCTACATTCCACCTCAGCAAGCTCAGTACAATCCTGACAAGACTCCAGAATTTGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATCTTGGGCTTGGCCTTTGTTGTGCGACACTACACCAAGAAAGAGTAG

Predicted protein sequences of Glyma04g41010

Limit To All Plant Sequences

>Glyma04g41010.1   sequence type=predicted peptide   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVNKRMASDRKLHTFEEVAKHDQTKDCWLIISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSARDMMEKYYIGEIDSSTVPLKRTYIPPQQAQYNPDKTPEFVIKILQFLVPLLILGLAFVVRHYTKKE*

>Glyma04g41010.3   sequence type=predicted peptide   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVNKRMASDRKLHTFEEVAKHDQTKDCWLIISGKVLLSATGKDATNDFEDVGHSDSARDMMEKYYIGEIDSSTVPLKRTYIPPQQAQYNPDKTPEFVIKILQFLVPLLILGLAFVVRHYTKKE*

>Glyma04g41010.5   sequence type=predicted peptide   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDRKLHTFEEVAKHDQTKDCWLIISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSARDMMEKYYIGEIDSSTVPLKRTYIPPQQAQYNPDKTPEFVIKILQFLVPLLILGLAFVVRHYTKKE*

>Glyma04g41010.6   sequence type=predicted peptide   gene model=Glyma04g41010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDRKLHTFEEVAKHDQTKDCWLIISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSARDMMEKYYIGEIDSSTVPLKRTYIPPQQAQYNPDKTPEFVIKILQFLVPLLILGLAFVVRHYTKKE*

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