SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49350 | AT | Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG2197 | KOG | Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins | JGI | ISS | |
| PTHR22957 | Panther | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | JGI | ISS | |
| PTHR22957:SF31 | Panther | GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN | JGI | ISS | |
| PF00566 | PFAM | TBC domain | JGI | ISS | |
| UniRef100_G7J869 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTPase activator-like protein of Rab-like small GTPases n=1 Tax=Medicago truncatula RepID=G7J869_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JYL4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYL4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g41000 not represented in the dataset |
Glyma04g41000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g13850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g231700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g41000.2 sequence type=transcript gene model=Glyma04g41000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGTTTTGCTCTTCTTCCGTTCCGCTATGAAAGCAAAAAGAAAGCCCGAAAGCATATATTAGATTAGATTCTGGTTTTGGTTTGGTTTCCCTACTCTACCACTCTTCCTTTCTATTTATTTCCATCTCAGTCCTTTCTCTCTCTTGACACTCTCCGGTGTGATGTGAGAGAGACTCCACTCTCTCTCTCTCTTCTATTATTTTCCATTCTTCTCTCTCTAACTGGTCTCAGAAACAACGAATTGAGGAGCCAACCAGGGATCATTGAAAGGGCATTTCTGTAATTTACCCTCCATGGTCACATCCACTCACTCGAACACCACCAACGACCCTCACTTCGTCGCCGGCGGTGCCGGGTTGTTCTCCATGGCTTCGGCGGTGGTTACTCCGGCGCTGCTCTTCACGGCCCTCGCCGGCCTTGTTTTCGTCTCCGTCGTCTTCTGCGGTGCCAGTAGGTAAAAAACCTAAGACCTCTCTCGAATGATCGAATTAGAGAGAGCATCGTCGAAATCGCAATAGCAAAAACCCTAGCTAGAGAGAGATACTGTTTTCGATTCCGATTTTGTTACACTAAAAGGAGAAAACAAAAACGGAAAAAACCGAAAGAAAAAAAGTGTACATAGAAGAAAGTTATAGATGAATCCCCTTAGACGAAGTCACAATTCGCAATCGTCGTCTTCGAATTCCTCTCCTTCGTCGTCGTCGTCGCAATCGTCGTCGTCGTCGTCTTCCTCCTCTTCGTGGATCCATTTGCGGTCGGTTCTATTCGTTGTCACTTCTTCCTCACCAGCCTCTTGTTCGTCCTCTGATCGATCTCCACTTCTGCGCATCCCCAGTGTTGGTGTCAGTGTCCGCTTAGGTTGATCAGCTTGTGTGTGTTGCGTTTCTGTTTTGGGTCTCTTTGTTCGGCAGCATTTCGGTCTGATTGGTTGAATCGTTGATTTGTTGGAAACTGCAATGTTTTTCAAAATTAAAATTAAAAAAAAATTCCGATTTGTCTGTGAAAGAAGAAAGGAGGGTTGAGGAGGACGAGGTAGTGGGAGGGAGACAGATCTCTCTTTTGATTTTGGTGGGGAAAATTTTGGTTTTTTTGTGTGGGAGATTTCTTTAATCTGAAGTTCCTTTTCTCGTGTCAAATCAATAGTGGGTGAAAAAACCTAACTAAATGGTGATCTTGATCGGACAGCTAGACCCCTGTTTGTCTTTTTTGTTTCTTCCCGTGCTATAGAGGGAGATCTGTGCTAGTATGTTTAGTGAGTGTGTTCATTTGGAGACTGAAAAAATATATTTTCTGAACCTAATTAAATTTTTGGTGTTTAAGAACATTTAAGACAGTATATTACAGTAGTTGTATGTCAATCAAACTGCTGCATCAAGGATTACAATTTTGAAGCTTTAAACTAGTTATATTATCTGAGGGGTGTTGATGTGTTCCAGTCTTCAAGGACAGTTTTTTTGTGTGCTGTCTTCATTATTATTATTATTATTAAATTATTAAATTGCATGCCCATAAAATTGTACTTCTTCAGTTAGTTAAAAATTTAAACTGATAATGGTGATGCTGTAATCTCATCGGAATTTGAAATCAACTGCTTTAATTTTCCAAGACTGTGTCGTGTAAATTTAGCAGTACACAAAGCAACAAACATGTGATATTATTGAAGTCAGTGCTGAACTTCACATTGGACAAGAACTCCATTGTTGATATAAAACATAACGCAAACTCGGATTTCTCAAACTTGATTTAATTCATTTTCATATGTAAATTTATTGCTGCATATTGCAATATTAAGTTATTAACTATGAAGTTTATGGCTTCTAGCACCGAATGCATTTAATTGTTTTGGCAGTAAGCAAATAAGTTAGTTCTACTTTTTACTCCAGAATCCATAAGCAGTTAGCAGTAATGAAATGAAAATGTATGAAATCTGTGACAGAATGTCATGCACAGTTTTGTAATTTTAAATTACTAAAACTTGTATGTGCTTGCTCAATTTTTTTTCCATGGGAAAAGAAGAAAGCTGCAATTGGCTTGAAAAAATGTATCTGTTATACTGCAGCACTGTGATTTGCTTTTAATCTGGAAGAATATATTTTTCTGTGTACTTTTTCACTCCCCCTAAATTGCTTAAATGATTGCTGCCTTTTTTCTATTCTGAAATTGACATACAAGCAGTAATAAAACTTCGTACCCCATTGTCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATATTGTACGCAACCTTACCCTTGCATATGCAAAAAGGCTGTTTCCGGATTCGAACCCATGACCAACAGGTCACCAAGACACAACTTTACCGCTGCATACAAGCAGTAATATTGAATAATTACTTTTGGCAAAATTTCAGGGGTCGTCTTAAATCACCATGGTCACGCAGGAAAAGAAAACATGTCCTTACACCTCAGCAATGGAAAAGCGTGTTTACCCAGGATGGGAGAATACGGGATGGTGGAATTAAGTTCTTGAAAAGAGTTCGCAGTGGAGGTGTTGATCCTAGTATCAGAGCTGAAGTTTGGCCATTCCTACTTGGAGTCTATGACTTGGACAGTACAAAAGAAGAAAGAGATGCTATAAGAACTCAAAATAGAAAGGAGTATGAGAAACTCCGCAGACAATGCCGCCAACTGCTAAAGCACAGCAATGGGAACTTTAAGTTAAATGAAATAGGTGAAATCAGCTATGAAGGAGATAGTGCAAGTTTTATTCAAGATTATGGTTCTCCTAGTTCTGAAGATGCAACGAGTGCCAGAGAATCTCTTTCTAGTGAGGAACGATGCCCAGATGCTGAATATTCAGATGATCCATCTAGTGCCCTGTTGGAAGGAGATGATGCTCCAAATATCAGCAATGCTGATGCCTCTGCACTGGATACTGATTCCACTGATTCAGACTCCTCAGAAGGTCCTGAGATAATTCAGACATTTCCTTCTGATGATGGTCAGGAAGAGAACAGTTCCAAGACAACTCCCAAGGAAAATTCTTCTCCCTCACCGATGAAAGTCCCATCAAAACAATGGACAAATGAAGATTTTGCCACATGGCAACGGATCATCCGACTTGATGCTGTACGTGCGAACGCAGAATGGATGCCATACTCCCCTTCTCAAGCAATTGTACCAGACAGTAGGGCATATCGTTCTGCTGAGGCTGTTGGGTTGAAGGATTATAGTCACCTAGATGCCAGCAGAATCTTTCATGCTGCTCGACTAGTTGCTATTCTCGAAGCATATGCTTTGTACGACCCTGAAATTGGTTACTGCCAGGGTATGAGTGATCTGCTATCTCCTATAGTTAGTGTTATACCTGAAGATCATGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAAAAGGCTCGGCAAAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTTGCAAAGATTATCAAGTTCAAGGATGGCCATCTGTTTAGGCATCTGCAGAAGCTCCAGGCTGAGGATTGCTTTTTTGTGTACAGGATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTGTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGAGCTGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAGCGAGCTCCACCGACAGATGATTTATTGCTTTACGCAATAGCCGCTTCAGTTTTACAGAGGAGGAAACTAATTATCGAGAAGTATAGCAGCATGGACGAGATCCTCAAGGAATGCAATGGCATGGCAGGACACCTTGATGTTTGGAAGCTGCTGGATGATGCACATAACTTGGTGGTCACCCTTCATGACAAAATGAAAATAGAGACATCATTCCGATGACCTGTAGTTGATACTTTTACAAACTATTAGTTTATAATATTGGCCAAAAGATCTTTGCTTTCAAGCTGCCAGATTTCTCCTCTGCATCAAAAAATTCTGCAAATGTCGAGTATATATTGCAATGAAGCCTCTGCAGCTGCATGCTGAAAATTGCCACTGCTTATTTACGAGACTCTGATTTCGACAATTTTGGCTCATGTGGGTATTGAAGATGGCTAGATTTAGATGGCATGGCTGCTTGCTGAATTTTGCCACTGCTTAATGCTTATTTACGAGGCTTAGTTTCGACTATGTTGCCTTAATTTGGGGCATTGAAGCTGGTTAGATTTAGATGGCATCTTCTTTTTTTTACCTCTTTATTTTTCACGCTGGCTCCATCCTTTTCTTTTCTTTTCATTTCTTTTTCAATTCTGATTTGGGACACATCTCGGAGCACCTTTGCGAAAAGCAGGAGTGGTAGGTGCATGTAACCGTTTGATGAAGAGGCTGAGATATTGTCGACAATTATGATGTTGTCCTTTTTGACTGAAGGCTCAACTCATGAGTCCTTTTGACTCTTTTAGCTGCTGACCGAGTTGCATATCATTATGTGATGTGAGTTTGAGGGTCACTGGTTAAGTTAGGCCCTGGTATACATATTGCCTCATAAATTGACCACGTACCTTTACTTATTTATCAGGCCTAACAGCTCTTTGTTTTTCTCT
>Glyma04g41000.1 sequence type=CDS gene model=Glyma04g41000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCCCCTTAGACGAAGTCACAATTCGCAATCGTCGTCTTCGAATTCCTCTCCTTCGTCGTCGTCGTCGCAATCGTCGTCGTCGTCGTCTTCCTCCTCTTCGTGGATCCATTTGCGGTCGGTTCTATTCGTTGTCACTTCTTCCTCACCAGCCTCTTGTTCGTCCTCTGATCGGGGTCGTCTTAAATCACCATGGTCACGCAGGAAAAGAAAACATGTCCTTACACCTCAGCAATGGAAAAGCGTGTTTACCCAGGATGGGAGAATACGGGATGGTGGAATTAAGTTCTTGAAAAGAGTTCGCAGTGGAGGTGTTGATCCTAGTATCAGAGCTGAAGTTTGGCCATTCCTACTTGGAGTCTATGACTTGGACAGTACAAAAGAAGAAAGAGATGCTATAAGAACTCAAAATAGAAAGGAGTATGAGAAACTCCGCAGACAATGCCGCCAACTGCTAAAGCACAGCAATGGGAACTTTAAGTTAAATGAAATAGGTGAAATCAGCTATGAAGGAGATAGTGCAAGTTTTATTCAAGATTATGGTTCTCCTAGTTCTGAAGATGCAACGAGTGCCAGAGAATCTCTTTCTAGTGAGGAACGATGCCCAGATGCTGAATATTCAGATGATCCATCTAGTGCCCTGTTGGAAGGAGATGATGCTCCAAATATCAGCAATGCTGATGCCTCTGCACTGGATACTGATTCCACTGATTCAGACTCCTCAGAAGGTCCTGAGATAATTCAGACATTTCCTTCTGATGATGGTCAGGAAGAGAACAGTTCCAAGACAACTCCCAAGGAAAATTCTTCTCCCTCACCGATGAAAGTCCCATCAAAACAATGGACAAATGAAGATTTTGCCACATGGCAACGGATCATCCGACTTGATGCTGTACGTGCGAACGCAGAATGGATGCCATACTCCCCTTCTCAAGCAATTGTACCAGACAGTAGGGCATATCGTTCTGCTGAGGCTGTTGGGTTGAAGGATTATAGTCACCTAGATGCCAGCAGAATCTTTCATGCTGCTCGACTAGTTGCTATTCTCGAAGCATATGCTTTGTACGACCCTGAAATTGGTTACTGCCAGGGTATGAGTGATCTGCTATCTCCTATAGTTAGTGTTATACCTGAAGATCATGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAAAAGGCTCGGCAAAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTTGCAAAGATTATCAAGTTCAAGGATGGCCATCTGTTTAGGCATCTGCAGAAGCTCCAGGCTGAGGATTGCTTTTTTGTGTACAGGATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTGTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGAGCTGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAGCGAGCTCCACCGACAGATGATTTATTGCTTTACGCAATAGCCGCTTCAGTTTTACAGAGGAGGAAACTAATTATCGAGAAGTATAGCAGCATGGACGAGATCCTCAAGGAATGCAATGGCATGGCAGGACACCTTGATGTTTGGAAGCTGCTGGATGATGCACATAACTTGGTGGTCACCCTTCATGACAAAATGAAAATAGAGACATCATTCCGATGA >Glyma04g41000.2 sequence type=CDS gene model=Glyma04g41000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAGGTATGGGGGAGGGATATTGTACGCAACCTTACCCTTGCATATGCAAAAAGGCTGTTTCCGGATTCGAACCCATGACCAACAGGTCACCAAGACACAACTTTACCGCTGCATACAAGCAGTAATATTGAATAATTACTTTTGGCAAAATTTCAGGGGTCGTCTTAAATCACCATGGTCACGCAGGAAAAGAAAACATGTCCTTACACCTCAGCAATGGAAAAGCGTGTTTACCCAGGATGGGAGAATACGGGATGGTGGAATTAAGTTCTTGAAAAGAGTTCGCAGTGGAGGTGTTGATCCTAGTATCAGAGCTGAAGTTTGGCCATTCCTACTTGGAGTCTATGACTTGGACAGTACAAAAGAAGAAAGAGATGCTATAAGAACTCAAAATAGAAAGGAGTATGAGAAACTCCGCAGACAATGCCGCCAACTGCTAAAGCACAGCAATGGGAACTTTAAGTTAAATGAAATAGGTGAAATCAGCTATGAAGGAGATAGTGCAAGTTTTATTCAAGATTATGGTTCTCCTAGTTCTGAAGATGCAACGAGTGCCAGAGAATCTCTTTCTAGTGAGGAACGATGCCCAGATGCTGAATATTCAGATGATCCATCTAGTGCCCTGTTGGAAGGAGATGATGCTCCAAATATCAGCAATGCTGATGCCTCTGCACTGGATACTGATTCCACTGATTCAGACTCCTCAGAAGGTCCTGAGATAATTCAGACATTTCCTTCTGATGATGGTCAGGAAGAGAACAGTTCCAAGACAACTCCCAAGGAAAATTCTTCTCCCTCACCGATGAAAGTCCCATCAAAACAATGGACAAATGAAGATTTTGCCACATGGCAACGGATCATCCGACTTGATGCTGTACGTGCGAACGCAGAATGGATGCCATACTCCCCTTCTCAAGCAATTGTACCAGACAGTAGGGCATATCGTTCTGCTGAGGCTGTTGGGTTGAAGGATTATAGTCACCTAGATGCCAGCAGAATCTTTCATGCTGCTCGACTAGTTGCTATTCTCGAAGCATATGCTTTGTACGACCCTGAAATTGGTTACTGCCAGGGTATGAGTGATCTGCTATCTCCTATAGTTAGTGTTATACCTGAAGATCATGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAAAAGGCTCGGCAAAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTTGCAAAGATTATCAAGTTCAAGGATGGCCATCTGTTTAGGCATCTGCAGAAGCTCCAGGCTGAGGATTGCTTTTTTGTGTACAGGATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTGTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGAGCTGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAGCGAGCTCCACCGACAGATGATTTATTGCTTTACGCAATAGCCGCTTCAGTTTTACAGAGGAGGAAACTAATTATCGAGAAGTATAGCAGCATGGACGAGATCCTCAAGGAATGCAATGGCATGGCAGGACACCTTGATGTTTGGAAGCTGCTGGATGATGCACATAACTTGGTGGTCACCCTTCATGACAAAATGAAAATAGAGACATCATTCCGATGA
>Glyma04g41000.1 sequence type=predicted peptide gene model=Glyma04g41000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPLRRSHNSQSSSSNSSPSSSSSQSSSSSSSSSSWIHLRSVLFVVTSSSPASCSSSDRGRLKSPWSRRKRKHVLTPQQWKSVFTQDGRIRDGGIKFLKRVRSGGVDPSIRAEVWPFLLGVYDLDSTKEERDAIRTQNRKEYEKLRRQCRQLLKHSNGNFKLNEIGEISYEGDSASFIQDYGSPSSEDATSARESLSSEERCPDAEYSDDPSSALLEGDDAPNISNADASALDTDSTDSDSSEGPEIIQTFPSDDGQEENSSKTTPKENSSPSPMKVPSKQWTNEDFATWQRIIRLDAVRANAEWMPYSPSQAIVPDSRAYRSAEAVGLKDYSHLDASRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVIPEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDGHLFRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYSSMDEILKECNGMAGHLDVWKLLDDAHNLVVTLHDKMKIETSFR* >Glyma04g41000.2 sequence type=predicted peptide gene model=Glyma04g41000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRYGGGILYATLPLHMQKGCFRIRTHDQQVTKTQLYRCIQAVILNNYFWQNFRGRLKSPWSRRKRKHVLTPQQWKSVFTQDGRIRDGGIKFLKRVRSGGVDPSIRAEVWPFLLGVYDLDSTKEERDAIRTQNRKEYEKLRRQCRQLLKHSNGNFKLNEIGEISYEGDSASFIQDYGSPSSEDATSARESLSSEERCPDAEYSDDPSSALLEGDDAPNISNADASALDTDSTDSDSSEGPEIIQTFPSDDGQEENSSKTTPKENSSPSPMKVPSKQWTNEDFATWQRIIRLDAVRANAEWMPYSPSQAIVPDSRAYRSAEAVGLKDYSHLDASRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVIPEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDGHLFRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYSSMDEILKECNGMAGHLDVWKLLDDAHNLVVTLHDKMKIETSFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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