SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53580 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr5:21765215-21766919 REVERSE LENGTH=365 | SoyBase | E_val: 2.00E-125 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0009443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxal 5'-phosphate salvage | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0042821 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxal biosynthetic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004033 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity | SoyBase | N/A | ISS |
| GO:0050236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxine:NADP 4-dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0070402 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADPH binding | SoyBase | N/A | ISS |
| KOG1575 | KOG | Voltage-gated shaker-like K+ channel, subunit beta/KCNAB | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF88 | Panther | ALDO-KETO REDUCTASE | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_G7J873 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldo-keto reductase/ oxidoreductase n=1 Tax=Medicago truncatula RepID=G7J873_MEDTR | SoyBase | E_val: 1.00E-136 | ISS |
| UniRef100_I1JYL1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYL1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g40970 not represented in the dataset |
Glyma04g40970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g13880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40970.1 sequence type=CDS gene model=Glyma04g40970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTCTCAGTTTGCAGTATCAACATTAACCCCATAGCATTAGCAACACCATCTTTCTCATTCAAGTCTCTCAAATTCCCTTCCTTCTGGCCAACACAAAAGGTGAAGATGGGTCCTCTGAGTGTGTCTCCCATGAGATTTGGAACATGGGCATGGGGGACAACGGCATCAATCTCTTTGATCTTTGACACTGCTGATTCTTATGGCACTGGAAAGTTAAATGGTCAGGGCGAGAAGCTTCTGGGGAGGTTCATTCGAGAATTTCAAGAGCAAAAGGGGAGCCAGCGTGAAAGAGTCATTGCTACTAAGTTTGCAGCATATCCATGGCGCCTTACACCAGGGCGGTTTGTGAATGCTTGCAGGGCATCGCTAGATATAAGAGAAGGGGGTTTAGTTAAAGCAGTTGGAGTAAGTAATTACGGACCAAAGCAGCTTTTAAAGATGCATGATTATCTGAAAGACCTTGGAGTCCCCTTGTGCTCAGCCCAGTTGCAATTTTCTCTGTTAAGCACGGGGAAATATCAACTAAAGATCAAGAGCATATGTGACAGTCTGGGTATTCGTATGATTGCATATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATATTCATCATCCAAACTTCCGAGTGGGCCAAGGTTTGCGTTGCTATTTAAGCAAATTCTTCCGGGACTAGATCCTTTATTGAGTTCCCTGAGAGAGATTGCAAATAAACGACGGAAAACCATGTCACAAAACCACCGACCAACCCACTTAATTGTCCTTGTCTTCGGTGCGCGGAAAATGACAATGCTGACCAAACCATGCCTGAACAAACAACATACCTTATCGGCTTATCATATCATTTTTTGCTTTATCATGTCAGTCAAATCAATTAAACAAGCTGAGGAAAATTTGGGTGCTCTTCGTTGGCGCCTCTCCTCAGACGAGTTGCTTCAGTTGGAGGATGCAGCAAATGAATCACCTCGCAGGATGATCCAAAACATTTTCCAAACCAGATACGGAGGATGCAATCATCCAAGTGTTTTACATGACTTGGCATTCATAACAGATAAAACCAGTGGCGGGACCTTCGCACTCGGTTCGAAGGAATGCATAGTTTACTCAATGGAGGTCACTGGTTTATATCATCTGGTATCATTAAAGGCAGAGAGCAAACAAGCTTGTCCAGGAAAAATGACAACGGATCAATCTATAACGGCACAACAATGGCGTAAACTAATGCAAGAGTCCATGCCAGTGATGCCACAACGTAGTTTTGGACAATCTCATCAGATAATATTGCTTTGTTGTTAA
>Glyma04g40970.1 sequence type=predicted peptide gene model=Glyma04g40970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSVCSININPIALATPSFSFKSLKFPSFWPTQKVKMGPLSVSPMRFGTWAWGTTASISLIFDTADSYGTGKLNGQGEKLLGRFIREFQEQKGSQRERVIATKFAAYPWRLTPGRFVNACRASLDIREGGLVKAVGVSNYGPKQLLKMHDYLKDLGVPLCSAQLQFSLLSTGKYQLKIKSICDSLGIRMIAYSPLGLGMLTGKYSSSKLPSGPRFALLFKQILPGLDPLLSSLREIANKRRKTMSQNHRPTHLIVLVFGARKMTMLTKPCLNKQHTLSAYHIIFCFIMSVKSIKQAEENLGALRWRLSSDELLQLEDAANESPRRMIQNIFQTRYGGCNHPSVLHDLAFITDKTSGGTFALGSKECIVYSMEVTGLYHLVSLKAESKQACPGKMTTDQSITAQQWRKLMQESMPVMPQRSFGQSHQIILLCC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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