SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G57680 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVER | SoyBase | E_val: 2.00E-25 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JYK9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JYK9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q7X8Q0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P0041A24.7 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7X8Q0_ORYSJ | SoyBase | E_val: 2.00E-22 | ISS |
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Glyma04g40940 not represented in the dataset |
Glyma04g40940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g231300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40940.1 sequence type=CDS gene model=Glyma04g40940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTCACGCTTTCATTACCACTCCTCAACTCAGCTTTCGACCTCATCACCGTAATCTTCATCTCCGGGTTAATAATCCTCTCCGTTTTGTCCCTATGCTTCATCTTCCACCTTCGCTTCAAATCAAAATCCATCACACACTTACAAGGCTTCAACTCGCTCTGGACCGTACGGTTCCTCCTTGTGTTATTCATATTCTTATGGTCCATCACCGAACTTCTCCGGTTACCTTTTTTTCGCCGAAAATATCTGTACCCTTTTGTACCCTCTTTTAGTATATCCCAACAAGCCAACCTCTGCAAAGTCCACATCGTACTCTCCCTCGGATTCTTCGAACCCGCGTTCCTCGTAACCCTATTATTCCTTCTCAATGCTTCGATAAAAAGGAAGACACCGAATAATGACAAGTGGGCCATCACGTCCGTGCTCCTCACGTGCCTCCCCGTTGCGACGCTCCAAGCATTGCTCATATTCTTCGCCCCTTTCAAGAACCGTGTGCCGGCGGAAAGCTCGGTGGTTCTGAACGACGGTTACGGCTTCGAGACCGTGCTCTGCGCGTACCCTTTTCTGAGTAGTGTTCTTTTTGCGGTGTTTGGTGTTGCGTACTCGTCGTGGTTCTTGTTCTCGTGTTGGAGGGTTTTGTTGCTTGTCATCAACAAAGGCTTGAGGGTGAGGATTTACGTGTTGGCTTCGATTGTGCTCGTGGCGATTCCGCTGCAGATTGTGTCTTTAGGGTTCAGCGTTCTGTGGAGCCCGCACCAGGAGGTTTACGGAGTTGTTTCGCTCGTGGGGTTCCTCGCCGCGTTCGGCTGCGCCACCGCCGGGGAGGGCATTCTCGTCATTAAGCCTATCTCCGATGCGTTGGACGCTGGGGGAAACTGTTGCGTGTCGACCCCGCAGCCGGGGGCAAGGCAAAGTGAAGAAACCGAAGAATCAGGTGTCGTCGTTCGTTTGGAGGGAGGGTAA
>Glyma04g40940.1 sequence type=predicted peptide gene model=Glyma04g40940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFTLSLPLLNSAFDLITVIFISGLIILSVLSLCFIFHLRFKSKSITHLQGFNSLWTVRFLLVLFIFLWSITELLRLPFFRRKYLYPFVPSFSISQQANLCKVHIVLSLGFFEPAFLVTLLFLLNASIKRKTPNNDKWAITSVLLTCLPVATLQALLIFFAPFKNRVPAESSVVLNDGYGFETVLCAYPFLSSVLFAVFGVAYSSWFLFSCWRVLLLVINKGLRVRIYVLASIVLVAIPLQIVSLGFSVLWSPHQEVYGVVSLVGFLAAFGCATAGEGILVIKPISDALDAGGNCCVSTPQPGARQSEETEESGVVVRLEGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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