Glyma04g40770 - SoyBase

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Report for Sequence Feature Glyma04g40770

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46734246
stop:	46736834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46780	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:19229516-19231043 FORWARD LENGTH=336	SoyBase	E_val: 2.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0149	KOG	Predicted RNA-binding protein SEB4 (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J8A8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein 24-B n=1 Tax=Medicago truncatula RepID=G7J8A8_MEDTR	SoyBase	E_val: 4.00E-102	ISS
UniRef100_I1JYJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g40770 not represented in the dataset	Glyma04g40770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40770

Paralog	Evidence	Comments
Glyma06g14020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g229600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g40770

Limit To All Plant Sequences

>Glyma04g40770.5   sequence type=transcript   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCGGCACGTATCTTCGGACCCATTAAAAGTTTGGAAAATCTTTGATATGGGCAAACTTATAAAAACGGTAGACTGCTACTTTTTACACACTCAATTTAATAATCAAAATACACATTACCATTAGAGGTGTCTGTGTAGTTGTTTTTCATAACTAGGATACATGAGAGACATCAAAATATTTACTGTACTATTTGTTTTATTTTACATGCTCCTTCTATTGTCATTTTGCCTACTTTCTAAGTAACTCTTCTGTATAATGACATGAATAAAAATATTGCATAAATAAAGGATTGGATTTTCTTGTGTAGTTTCCTTTTTCTATTTTCTTTCTCTTTTTCAGTTTTCTCTGTTCCTCTGCTTTCATTTCTTACATTTTCAACTCTTCATTAACTTTCTTGCTAAGGGAATCTTCGTCGTGGAATCTGAGGAAACGTCAGTATGAAAATCAAGGAATTTTCCTCGCCATAATGAACGAGAGAATCACTAGAGGCACATGTTGGTAGAAGATTTTCTCTGGGGATTGACTTGATTGATTGTTCACAGTTCATGCTAAACAACCAACCAAACGGCTATTCTGACTATTTTTTGATCCTGTTTCTAATCTTGTTTCTTAGACTGTGTCTAAGTCTTCCTTTCAGGCTTTGTGAATTGAATTCCGATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAAAGCTATGATGTCAATTGACTAGAATAGTGAAAGTAAAAAGAAAAATGACGCTGCTCAATAAACCAAGAAGCTCTGAGTACATGCTCGATGAGGTGGTCCAGCAAAGGAACTAAATCAAGCAATAACGTATTGAGATTTCCCATCGATGGAACATCTGATCTTAGAGACCAGACACTGAGGATGAAATGAATTCTGGATTTGTTCATTGTCTTTGAACATTTTTACTTTTCAGCATTCTAGTGCACATTATTCATTCTTCGGTTTTCCTTTTTTTCTTCATTTTAATTTTCTTTTTTAACATTGGATTCCTGCTAAGCTATAGTTGAAAAAGAAAAAAAAATGTTTGTTATTATTCTTTTATTCTTATACCTATGCTTTGCATTCCTATTTTGTGTTAGTTAGCTGAACTAAAATTGCAAGAGTAATATCAGCATTTGTTTCCATGTTTCCCAGATCATAGCAATTCTATCTCTTTTTAGCTGAAGTAAAACTCGGTTTTGGA

>Glyma04g40770.6   sequence type=transcript   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCGGCACGTATCTTCGGACCCATTAAAAGTTTGGAAAATCTTTGATATGGGCAAACTTATAAAAACGGTAGACTGCTACTTTTTACACACTCAATTTAATAATCAAAATACACATTACCATTAGAGGTGTCTGTGTAGTTGTTTTTCATAACTAGGATACATGAGAGACATCAAAATATTTACTGTACTATTTGTTTTATTTTACATGCTCCTTCTATTGTCATTTTGCCTACTTTCTAAGTAACTCTTCTGTATAATGACATGAATAAAAATATTGCATAAATAAAGGATTGGATTTTCTTGTGTAGTTTCCTTTTTCTATTTTCTTTCTCTTTTTCAGTTTTCTCTGTTCCTCTGCTTTCATTTCTTACATTTTCAACTCTTCATTAACTTTCTTGCTAAGGGAATCTTCGTCGTGGAATCTGAGGAAACGTCAGTATGAAAATCAAGGAATTTTCCTCGCCATAATGAACGAGAGAATCACTAGAGGCACATGTTGACTGTGTCTAAGTCTTCCTTTCAGGCTTTGTGAATTGAATTCCGATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAAAGCTATGATGTCAATTGACTAGAATAGTGAAAGTAAAAAGAAAAATGACGCTGCTCAATAAACCAAGAAGCTCTGAGTACATGCTCGATGAGGTGGTCCAGCAAAGGAACTAAATCAAGCAATAACGTATTGAGATTTCCCATCGATGGAACATCTGATCTTAGAGACCAGACACTGAGGATGAAATGAATTCTGGATTTGTTCATTGTCTTTGAACATTTTTACTTTTCAGCATTCTAGTGCACATTATTCATTCTTCGGTTTTCCTTTTTTTCTTCATTTTAATTTTCTTTTTTAACATTGGATTCCTGCTAAGCTATAGTTGAAAAAGAAAAAAAAATGTTTGTTATTATTCTTTTATTCTTATACCTATGCTTTGCATTCCTATTTTGTGTTAGTTAGCTGAACTAAAATTGCAAGAGTAATATCAGCATTTGTTTCCATGTTTCCCAGATCATAGCAATTCTATCTCTTTTTAGCTGAAGTAAAACTCGGTTTTGGA

Coding sequences of Glyma04g40770

Limit To All Plant Sequences

>Glyma04g40770.1   sequence type=CDS   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGTCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAA

>Glyma04g40770.5   sequence type=CDS   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAA

>Glyma04g40770.6   sequence type=CDS   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGCCAAGGCAAAATAAGATGATGAGTCCAAACCTTGCAAAACAAGTTGGTGACGCAACCTATACCAAGATTTTTGTTGGAGGACTGGCTTGGGGGACTAAGAGAGACACTCTAAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCCAACATGTCACCTCAGGAGTTCACAGTCGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTCCAGCACTGGATTAGACACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGAACAGAAGTCTTCAACTTAA

Predicted protein sequences of Glyma04g40770

Limit To All Plant Sequences

>Glyma04g40770.1   sequence type=predicted peptide   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPRQNKMMSPNLAKQVGDATYTKIFVGGLAWGTKRDTLKRYFDQFGEILEAVVITDKITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKLSSPSWNMAPIPLQGTSTYYNQHIPHYPFPYPAYSPTFRYPGYPHPQDLYEMNYNNAYGGQQLPLRWLPAYCQPFYGLGRQFIPTAYVKKAQTPNMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATGVLESPQEQKSST*

>Glyma04g40770.5   sequence type=predicted peptide   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPRQNKMMSPNLAKQVGDATYTKIFVGGLAWGTKRDTLKRYFDQFGEILEAVVITDKITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKLSSPSWNMAPIPLQGTSTYYNQHIPHYPFPYPAYRYPGYPHPQDLYEMNYNNAYGGQQLPLRWLPAYCQPFYGLGRQFIPTAYVKKAQTPNMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATGVLESPQEQKSST*

>Glyma04g40770.6   sequence type=predicted peptide   gene model=Glyma04g40770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPRQNKMMSPNLAKQVGDATYTKIFVGGLAWGTKRDTLKRYFDQFGEILEAVVITDKITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKLSSPSWNMAPIPLQGTSTYYNQHIPHYPFPYPAYRYPGYPHPQDLYEMNYNNAYGGQQLPLRWLPAYCQPFYGLGRQFIPTAYVKKAQTPNMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATGVLESPQEQKSST*

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