Glyma04g40760 - SoyBase

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Report for Sequence Feature Glyma04g40760

Feature Type:	gene_model
Chromosome:	Gm04
Start:	46723823
stop:	46729765
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g40760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32790	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 11 \| chr1:11875174-11877188 REVERSE LENGTH=358	SoyBase	E_val: 3.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0131	KOG	Splicing factor 3b, subunit 4	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF187	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF07145	PFAM	Ataxin-2 C-terminal region	JGI		ISS
UniRef100_G7J8B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor, arginine/serine-rich n=1 Tax=Medicago truncatula RepID=G7J8B0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g40760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g40760

Paralog	Evidence	Comments
Glyma06g14030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g40760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g229500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g40760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g40760

Limit To All Plant Sequences

>Glyma04g40760.1   sequence type=CDS   gene model=Glyma04g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGAAAACAATGTAGTGTCATCGAACTCAGGCGAGGTTGAGCAATCAAAACCCAGAAGTGGGTCCATCAACGACGATCAGAAGCTGAACAACGGTGTCTTCAACCACCAAGATAGAGTTCCTGGCACTATGCCAGTGCCCAATAGCAATTATAACTACGAGGCCCAAATGGGTCAGATGCACACAAATGGGGTGAACAATGATGGGTATGGAATGAATGGGGTCATTTGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTACCTACCTGGACCTGGTGCCGGTGCTGGTGCCGGGTTTGGTTACCCTAATAATTTTATACTGCTCAATAACTTTGGTGATGCTAACGGTCAAACTAACAGAAGGAGGAAGAATGGCTATAATCATGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAGAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCAGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCCTTCGTTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTACTACCTTCGAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGTTCACGTGCTCCTCGTCCTTCTATGCACTGA

Predicted protein sequences of Glyma04g40760

Limit To All Plant Sequences

>Glyma04g40760.1   sequence type=predicted peptide   gene model=Glyma04g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVAENVGAKIGSSSQNLENNVVSSNSGEVEQSKPRSGSINDDQKLNNGVFNHQDRVPGTMPVPNSNYNYEAQMGQMHTNGVNNDGYGMNGVICGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGYLPGPGAGAGAGFGYPNNFILLNNFGDANGQTNRRRKNGYNHGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAGLFLNCGQVVDCRVCGDPNSILRFAFVEFTDEDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH*

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