SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32790 | AT | Annotation by Michelle Graham. TAIR10: CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358 | SoyBase | E_val: 2.00E-149 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0131 | KOG | Splicing factor 3b, subunit 4 | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF187 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF07145 | PFAM | Ataxin-2 C-terminal region | JGI | ISS | |
| UniRef100_G7J8B0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor, arginine/serine-rich n=1 Tax=Medicago truncatula RepID=G7J8B0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JYJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYJ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g40750 not represented in the dataset |
Glyma04g40750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g14050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g229400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g40750.2 sequence type=transcript gene model=Glyma04g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCCATTAACATCATCTGTCATGAAAGGTAAGTGTCTCATTAATTAATGTCTTGAATATCAAATCTGTGGCTTTTGTTTTTGGGTATCCTGCCTACGCGTGGCGACATGTGTGACTGAATGGGCAGTTGTGGAAAATTAATGAACAATTGTAAAAAAATACAAAAAATTGGGTCACGCTATTCATTTTTTTCTTTGATGCATTCATCATCACCATCAAGACAACAACATCTTCAATTTGGGACGTTCTTCTTCTTCTCAGCTGCAAGGTCCAAAAAGTCAGTGCAGTGAAAACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTCATCAGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAGATTCACTGAAAAACCTCGAAGCGGAGAAAAAAGGCAACAACTTTTCATCTCTACGCAAGTGGTTATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCAGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAAAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTGACGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGAATCATCCTTTCTCGTGTTTCTGCTGCTGCTGCAACTCGGAGATATATTTACATATATACATACATAGAAACAGATATATTCTAAGGGTACCTATGGCGTTTTGTTGATACTTTTGTCCTCGAGGCTTGCAGTATGGTATCTTTGTTTCCTGTTGGGGTCATGAGTTGTGTTTAGCTCGTAGAGTTGGATGGCGTTTTGAGGATCTCCAAGGCTTAATTAATTTATGATGGGTTGATCTTGCAGGAGAAAATTTTATAACTGGATTTTTCTAACATCTGGGAATTTATTTAAAAGGAACATGCTACAAAGTCTTTGTTTTAGTCATGTGCTGTTTGTTTGTGATCTTGCGTACACTAACCTCACTGCCACAACTTCCACCTGCTTTTCATTTAATTTTAATTAATAATTGCGTTTTACAAAGAATGTGTTAAAGTAATAAGTATAGTTCTGTTGAGTTTATGAAGGAAGACTTGGTTCAATTCTTACATGATAACATCTTTGGAAGGAAGTGAGAAGTTTTAAATATGATTAAGCTTTGGGTGGAATATCAGTTCCATAGCTGGTTCTGTAGATCGAAGTTTGTGGAGATTTTTTAGGTTCTTACCAAGAAACCAAAGGTCTTATATTATAGCCATAAAAAAAAAAGAGTATATTGCTAACAACCCCCTTTTAGAAACTAGCATTGGCTGTTAGTGGGATAAAACTTCTTTGTTCTCTCATTATTGCTTTATGTACTTTCCATTACATTATGAGTTCATTACAGAATGTAATTTATATTCCGGAATGAGTTTTTTATGATGCAATGGGAAATG
>Glyma04g40750.1 sequence type=CDS gene model=Glyma04g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCAGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAAAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTGACGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGA >Glyma04g40750.2 sequence type=CDS gene model=Glyma04g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCAGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAAAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTGACGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGA
>Glyma04g40750.1 sequence type=predicted peptide gene model=Glyma04g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVAENVGAKIGSSSQSLENGLVSADSGEVEKSKTKGDQNLNNGVFNHQERVPGTMPVPNGNFSYKAQMHANGVNNDGYGMNGVTSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQTNNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH* >Glyma04g40750.2 sequence type=predicted peptide gene model=Glyma04g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVAENVGAKIGSSSQSLENGLVSADSGEVEKSKTKGDQNLNNGVFNHQERVPGTMPVPNGNFSYKAQMHANGVNNDGYGMNGVTSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQTNNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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